| Anonymous | Login | 2024-10-11 13:38 CDT |  |
| My View | View Issues |
| View Issue Details [ Jump to Notes ] | [ Issue History ] [ Print ] | ||||||||
| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0000093 | PyRosetta | [All Projects] Input Handling | public | 2012-09-04 11:36 | 2012-09-05 00:36 | ||||
| Reporter | Labonte | ||||||||
| Assigned To | Labonte | ||||||||
| Priority | low | Severity | minor | Reproducibility | always | ||||
| Status | resolved | Resolution | fixed | ||||||
| Platform | All platforms | OS | Any | OS Version | Any | ||||
| Product Version | [Rosetta] Trunk | ||||||||
| Fixed in Version | [Rosetta] Trunk | ||||||||
| Summary | 0000093: Seg fault when asking for name of non-existent atom in a Residue | ||||||||
| Description | Calling Residue.atom_name() with an index not in the the residue's atom list causes a long time delay followed by a seg fault. I assume a PyAssert() will fix. | ||||||||
| Steps To Reproduce | In [1]: from rosetta import * In [2]: init() In [3]: pose = pose_from_sequence("ACDEFGH") In [5]: res = pose.residue(2) In [6]: res.atom_name(11) Out[6]: ' HG ' In [7]: res.atom_name(12) Segmentation fault (core dumped) | ||||||||
| Tags | exception handling, PyRosetta | ||||||||
| Application(s) Affected | PyRosetta | ||||||||
| Command Line Used | N/A (See Steps To Reproduce above.) | ||||||||
| Developer Options | |||||||||
| Fixed in SVN Version | 50960 | ||||||||
| Attached Files | |||||||||
 Relationships |
|
 Relationships |
|
Notes |
|
|
(0000090) Sergey (Administrator) 2012-09-04 13:47 |
Yep, - PyAssert should be a way to go here! |
|
(0000091) Labonte (Developer) 2012-09-05 00:36 |
should be fixed -- along with several other RestidueType methods taking an atom index argument |
|
Notes |
|
Issue History |
|||
| Date Modified | Username | Field | Change |
| 2012-09-04 11:36 | Labonte | New Issue | |
| 2012-09-04 11:36 | Labonte | Status | new => assigned |
| 2012-09-04 11:36 | Labonte | Assigned To | => Labonte |
| 2012-09-04 13:47 | Sergey | Note Added: 0000090 | |
| 2012-09-04 19:35 | Labonte | Tag Attached: exception handling | |
| 2012-09-04 19:35 | Labonte | Tag Attached: PyRosetta | |
| 2012-09-05 00:36 | Labonte | Fixed in SVN Version | => 50960 |
| 2012-09-05 00:36 | Labonte | Note Added: 0000091 | |
| 2012-09-05 00:36 | Labonte | Status | assigned => resolved |
| 2012-09-05 00:36 | Labonte | Fixed in Version | => Trunk |
| 2012-09-05 00:36 | Labonte | Resolution | open => fixed |
|
Issue History |
| Copyright © 2000 - 2012 MantisBT Group |
|