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IDProjectCategoryView StatusDate SubmittedLast Update
0000089Rosetta[All Projects] Input Handlingpublic2012-08-27 15:522012-08-29 22:34
Assigned Todelucasl 
PlatformAll platformsOSAnyOS VersionAny
Product VersionAll 
Fixed in Version 
Summary0000089: Incorrect chain in InterfaceScoreCalculator results in incomprehensible error message

The Mover was instantiated using the options:

<InterfaceScoreCalculator chains=X name=add_scores native=/home/dongen/for/philine/gpcr_benchmark/3rzeA_ligand.pdb scorefxn=hard_rep/>

but in the native protein, Chain X does not exist. The result is the error
ERROR: seqpos <= size()
ERROR:: Exit from: src/core/conformation/Conformation.hh line: 289

A debug log is found below

protocols.rosetta_scripts.ParsedProtocol: =======================BEGIN MOVER InterfaceScoreCalculator=======================
rosetta_scripts.mysql.linuxgccdebug: src/protocols/ligand_docking/ void protocols::ligand_docking::InterfaceScoreCalculator::append_ligand_docking_scores(const core::pose::Pose&, protocols::jd2::JobOP) const: Assertion `core::pose::has_chain(chain, *native_)' failed.

Program received signal SIGABRT, Aborted.
0x0000003dbce328a5 in raise () from /lib64/
TagsNo tags attached.
Application(s) Affectedrosetta_scripts
Command Line Usedrosetta_scripts.default.linuxgccrelease @rescore.options -in:file:l list.relax_pdbs_rescore.txt -nstruct 1 -in:file:extra_res_fa 3rzeA.params -parser:protocol rescore.xml -database /sb/meiler/rosetta/rosetta-3.4/rosetta_database
Developer OptionsConfirmed As Bug
Fixed in SVN Version50879
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- Issue History
Date Modified Username Field Change
2012-08-27 15:52 delucasl New Issue
2012-08-27 15:52 delucasl Status new => assigned
2012-08-27 15:52 delucasl Assigned To => delucasl
2012-08-29 22:34 delucasl Fixed in SVN Version => 50879
2012-08-29 22:34 delucasl Status assigned => resolved
2012-08-29 22:34 delucasl Resolution open => fixed

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