0000057: Existing Comparative Modeling Crashes when using workshop example

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Date Submitted

Last Update

0000057

Rosetta

[All Projects] Crash

public

2012-08-02 01:16

2012-08-03 18:21

Reporter

ralford

Assigned To

Priority

normal

Severity

crash

Reproducibility

always

Status

new

Resolution

open

Platform

x86

OS X

OS Version

10.7

Product Version

Fixed in Version

Summary

0000057: Existing Comparative Modeling Crashes when using workshop example

Description

Comparative Modeling looking for residue 0, crashes the application

Output:

================================================================================
protocols.looprelax: ===
protocols.looprelax: === Refine
protocols.looprelax: ===
core.kinematics.FoldTree: FoldTree::reorder( 4 ) failed, new/old edge_list_ size mismatch
core.kinematics.FoldTree: 18 15
core.kinematics.FoldTree: FOLD_TREE EDGE 1 4 -1 EDGE 4 0 -1 EDGE 1 10 -1 EDGE 10 0 -1 EDGE 1 14 -1 EDGE 14 13 -1 EDGE 13 23 1 EDGE 13 21 -1 EDGE 22 23 -1 EDGE 23 35 2 EDGE 23 29 -1 EDGE 30 35 -1 EDGE 35 23 -1 EDGE 23 36 3 EDGE 23 32 -1 EDGE 33 36 -1 EDGE 36 23 -1 EDGE 23 400 -1
*** glibc detected *** /data/mec/rosetta/rosetta_source/bin/minirosetta.linuxgccrelease: double free or corruption (out): 0x0000000029046820 ***
======= Backtrace: =========
/lib64/libc.so.6[0x3e0c07230f]
/lib64/libc.so.6(cfree+0x4b)[0x3e0c07276b]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.2.so(_ZNK4core10kinematics8FoldTree17setup_edge_countsEv+0xc65)[0x2b66640a0ca5]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.2.so(_ZN4core12conformation12Conformation9fold_treeERKNS_10kinematics8FoldTreeE+0xb2e)[0x2b666401b27e]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_g.4.so(_ZN9protocols20comparative_modeling14LoopRelaxMover5applyERN4core4pose4PoseE+0x9408)[0x2b665ec3a388]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_g.4.so(_ZN9protocols20comparative_modeling23LoopRelaxThreadingMover5applyERN4core4pose4PoseE+0x969)[0x2b665ec457b9]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.1.so(_ZN9protocols3jd214JobDistributor7go_mainEN7utility7pointer10owning_ptrINS_5moves5MoverEEE+0x106a)[0x2b6661e0caea]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.1.so(_ZN9protocols3jd224FileSystemJobDistributor2goEN7utility7pointer10owning_ptrINS_5moves5MoverEEE+0x34)[0x2b6661dff1e4]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_g.4.so(_ZN9protocols20comparative_modeling7cm_mainEv+0x99)[0x2b665ec1fd19]
/data/mec/rosetta/rosetta_source/bin/minirosetta.linuxgccrelease[0x4031c8]
/lib64/libc.so.6(__libc_start_main+0xf4)[0x3e0c01d994]
/data/mec/rosetta/rosetta_source/bin/minirosetta.linuxgccrelease(__gxx_personality_v0+0x249)[0x4025e9]
======= Memory map: ========
00400000-00404000 r-xp 00000000 00:1d 3221359130 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/minirosetta.default.linuxgccrelease
00604000-00605000 rw-p 00004000 00:1d 3221359130 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/minirosetta.default.linuxgccrelease
00605000-00606000 rw-p 00605000 00:00 0
173f9000-3f0f9000 rw-p 173f9000 00:00 0 [heap]
3e0bc00000-3e0bc1c000 r-xp 00000000 08:01 2482554 /lib64/ld-2.5.so
3e0be1b000-3e0be1c000 r--p 0001b000 08:01 2482554 /lib64/ld-2.5.so
3e0be1c000-3e0be1d000 rw-p 0001c000 08:01 2482554 /lib64/ld-2.5.so
3e0c000000-3e0c14e000 r-xp 00000000 08:01 2482555 /lib64/libc-2.5.so
3e0c14e000-3e0c34d000 ---p 0014e000 08:01 2482555 /lib64/libc-2.5.so
3e0c34d000-3e0c351000 r--p 0014d000 08:01 2482555 /lib64/libc-2.5.so
3e0c351000-3e0c352000 rw-p 00151000 08:01 2482555 /lib64/libc-2.5.so
3e0c352000-3e0c357000 rw-p 3e0c352000 00:00 0
3e0cc00000-3e0cc82000 r-xp 00000000 08:01 2482558 /lib64/libm-2.5.so
3e0cc82000-3e0ce81000 ---p 00082000 08:01 2482558 /lib64/libm-2.5.so
3e0ce81000-3e0ce82000 r--p 00081000 08:01 2482558 /lib64/libm-2.5.so
3e0ce82000-3e0ce83000 rw-p 00082000 08:01 2482558 /lib64/libm-2.5.so
3e0d000000-3e0d014000 r-xp 00000000 08:01 270005 /usr/lib64/libz.so.1.2.3
3e0d014000-3e0d213000 ---p 00014000 08:01 270005 /usr/lib64/libz.so.1.2.3
3e0d213000-3e0d214000 rw-p 00013000 08:01 270005 /usr/lib64/libz.so.1.2.3
3e0e000000-3e0e00d000 r-xp 00000000 08:01 2482559 /lib64/libgcc_s-4.1.2-20080825.so.1
3e0e00d000-3e0e20d000 ---p 0000d000 08:01 2482559 /lib64/libgcc_s-4.1.2-20080825.so.1
3e0e20d000-3e0e20e000 rw-p 0000d000 08:01 2482559 /lib64/libgcc_s-4.1.2-20080825.so.1
3e0fc00000-3e0fce6000 r-xp 00000000 08:01 283492 /usr/lib64/libstdc++.so.6.0.8
3e0fce6000-3e0fee5000 ---p 000e6000 08:01 283492 /usr/lib64/libstdc++.so.6.0.8
3e0fee5000-3e0feeb000 r--p 000e5000 08:01 283492 /usr/lib64/libstdc++.so.6.0.8
3e0feeb000-3e0feee000 rw-p 000eb000 08:01 283492 /usr/lib64/libstdc++.so.6.0.8
3e0feee000-3e0ff00000 rw-p 3e0feee000 00:00 0
2b665bd22000-2b665bd24000 rw-p 2b665bd22000 00:00 0
2b665bd24000-2b665bfe5000 r-xp 00000000 00:1d 3221359489 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libdevel.so
2b665bfe5000-2b665c1e4000 ---p 002c1000 00:1d 3221359489 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libdevel.so
2b665c1e4000-2b665c1f4000 rw-p 002c0000 00:1d 3221359489 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libdevel.so
2b665c1f4000-2b665c214000 rw-p 2b665c1f4000 00:00 0
2b665c214000-2b665c24c000 r-xp 00000000 00:1d 3221359488 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.7.so
2b665c24c000-2b665c44b000 ---p 00038000 00:1d 3221359488 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.7.so
2b665c44b000-2b665c44e000 rw-p 00037000 00:1d 3221359488 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.7.so
2b665c44e000-2b665cabf000 r-xp 00000000 00:1d 3221359487 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.6.so
2b665cabf000-2b665ccbe000 ---p 00671000 00:1d 3221359487 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.6.so
2b665ccbe000-2b665ccdb000 rw-p 00670000 00:1d 3221359487 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.6.so
2b665ccdb000-2b665cd20000 rw-p 2b665ccdb000 00:00 0
2b665cd20000-2b665cea9000 r-xp 00000000 00:1d 3221359483 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_f.5.so
2b665cea9000-2b665d0a9000 ---p 00189000 00:1d 3221359483 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_f.5.so
2b665d0a9000-2b665d0b2000 rw-p 00189000 00:1d 3221359483 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_f.5.so
2b665d0b2000-2b665d0c5000 rw-p 2b665d0b2000 00:00 0
2b665d0c5000-2b665d178000 r-xp 00000000 00:1d 3221359485 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_e.5.so
2b665d178000-2b665d377000 ---p 000b3000 00:1d 3221359485 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_e.5.so
2b665d377000-2b665d37d000 rw-p 000b2000 00:1d 3221359485 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_e.5.so
2b665d37d000-2b665d382000 rw-p 2b665d37d000 00:00 0
2b665d382000-2b665d6f6000 r-xp 00000000 00:1d 3221359482 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_d.5.so
2b665d6f6000-2b665d8f5000 ---p 00374000 00:1d 3221359482 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_d.5.so
2b665d8f5000-2b665d903000 rw-p 00373000 00:1d 3221359482 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_d.5.so
2b665d903000-2b665d919000 rw-p 2b665d903000 00:00 0
2b665d919000-2b665d979000 r-xp 00000000 00:1d 3221359484 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_c.5.so
2b665d979000-2b665db79000 ---p 00060000 00:1d 3221359484 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_c.5.so
2b665db79000-2b665db7c000 rw-p 00060000 00:1d 3221359484 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_c.5.so
2b665db7c000-2b665db7f000 rw-p 2b665db7c000 00:00 0
2b665db7f000-2b665e064000 r-xp 00000000 00:1d 3221359486 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.5.so
2b665e064000-2b665e264000 ---p 004e5000 00:1d 3221359486 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.5.so
2b665e264000-2b665e283000 rw-p 004e5000 00:1d 3221359486 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.5.so
2b665e283000-2b665e2c2000 rw-p 2b665e283000 00:00 0
2b665e2c2000-2b665e423000 r-xp 00000000 00:1d 3221359481 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.5.so
2b665e423000-2b665e623000 ---p 00161000 00:1d 3221359481 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.5.so
2b665e623000-2b665e629000 rw-p 00161000 00:1d 3221359481 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.5.so
2b665e629000-2b665e636000 rw-p 2b665e629000 00:00 0
2b665e636000-2b665e8ac000 r-xp 00000000 00:1d 3221359475 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_h.4.so
2b665e8ac000-2b665eaac000 ---p 00276000 00:1d 3221359475 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_h.4.so
2b665eaac000-2b665eabb000 rw-p 00276000 00:1d 3221359475 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_h.4.so
2b665eabb000-2b665eae1000 rw-p 2b665eabb000 00:00 0
2b665eae1000-2b665ecef000 r-xp 00000000 00:1d 3221359480 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_g.4.so
2b665ecef000-2b665eeee000 ---p 0020e000 00:1d 3221359480 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_g.4.so
2b665eeee000-2b665eefa000 rw-p 0020d000 00:1d 3221359480 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_g.4.so
2b665eefa000-2b665ef0b000 rw-p 2b665eefa000 00:00 0
2b665ef0b000-2b665f08d000 r-xp 00000000 00:1d 3221359479 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_f.4.so
2b665f08d000-2b665f28c000 ---p 00182000 00:1d 3221359479 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_f.4.so
2b665f28c000-2b665f294000 rw-p 00181000 00:1d 3221359479 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_f.4.so
2b665f294000-2b665f29b000 rw-p 2b665f294000 00:00 0
2b665f29b000-2b665f366000 r-xp 00000000 00:1d 3221359474 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_e.4.so
2b665f366000-2b665f566000 ---p 000cb000 00:1d 3221359474 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_e.4.so
2b665f566000-2b665f569000 rw-p 000cb000 00:1d 3221359474 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_e.4.so
2b665f569000-2b665f56d000 rw-p 2b665f569000 00:00 0
2b665f56d000-2b665f5e2000 r-xp 00000000 00:1d 3221359472 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_d.4.so
2b665f5e2000-2b665f7e1000 ---p 00075000 00:1d 3221359472 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_d.4.so
2b665f7e1000-2b665f7e5000 rw-p 00074000 00:1d 3221359472 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_d.4.so
2b665f7e5000-2b665f7e8000 rw-p 2b665f7e5000 00:00 0
2b665f7e8000-2b665fa3e000 r-xp 00000000 00:1d 3221359477 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_c.4.so
2b665fa3e000-2b665fc3e000 ---p 00256000 00:1d 3221359477 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_c.4.so
2b665fc3e000-2b665fc48000 rw-p 00256000 00:1d 3221359477 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_c.4.so
2b665fc48000-2b665fc5f000 rw-p 2b665fc48000 00:00 0
2b665fc5f000-2b665fee5000 r-xp 00000000 00:1d 3221359478 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.4.so
2b665fee5000-2b66600e4000 ---p 00286000 00:1d 3221359478 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.4.so
2b66600e4000-2b66600f1000 rw-p 00285000 00:1d 3221359478 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.4.so
2b66600f1000-2b6660108000 rw-p 2b66600f1000 00:00 0
2b6660108000-2b66603bb000 r-xp 00000000 00:1d 3221359476 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.4.so
2b66603bb000-2b66605bb000 ---p 002b3000 00:1d 3221359476 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.4.so
2b66605bb000-2b66605c7000 rw-p 002b3000 00:1d 3221359476 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.4.so
2b66605c7000-2b66605d8000 rw-p 2b66605c7000 00:00 0
2b66605d8000-2b6661065000 r-xp 00000000 00:1d 3221359473 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.3.so
2b6661065000-2b6661264000 ---p 00a8d000 00:1d 3221359473 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.3.so
2b6661264000-2b6661296000 rw-p 00a8c000 00:1d 3221359473 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.3.so
2b6661296000-2b666133c000 rw-p 2b6661296000 00:00 0
2b666133c000-2b66613b2000 r-xp 00000000 00:1d 3221359471 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.2.so
2b66613b2000-2b66615b1000 ---p 00076000 00:1d 3221359471 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.2.so
2b66615b1000-2b66615b6000 rw-p 00075000 00:1d 3221359471 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.2.so
2b66615b6000-2b66615b9000 rw-p 2b66615b6000 00:00 0
2b66615b9000-2b6661886000 r-xp 00000000 00:1d 3221359470 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.2.so
2b6661886000-2b6661a85000 ---p 002cd000 00:1d 3221359470 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.2.so
2b6661a85000-2b6661a93000 rw-p 002cc000 00:1d 3221359470 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.2.so
2b6661a93000-2b6661ab8000 rw-p 2b6661a93000 00:00 0
2b6661ab8000-2b6661f15000 r-xp 00000000 00:1d 3221359469 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.1.so
2b6661f15000-2b6662114000 ---p 0045d000 00:1d 3221359469 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.1.so
2b6662114000-2b666212e000 rw-p 0045c000 00:1d 3221359469 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.1.so
2b666212e000-2b666215f000 rw-p 2b666212e000 00:00 0
2b666215f000-2b6662295000 r-xp 00000000 00:1d 3221359468 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.5.so
2b6662295000-2b6662494000 ---p 00136000 00:1d 3221359468 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.5.so
2b6662494000-2b666249c000 rw-p 00135000 00:1d 3221359468 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.5.so
2b666249c000-2b66624ac000 rw-p 2b666249c000 00:00 0
2b66624ac000-2b6662968000 r-xp 00000000 00:1d 3221359467 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.4.so
2b6662968000-2b6662b67000 ---p 004bc000 00:1d 3221359467 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.4.so
2b6662b67000-2b6662b83000 rw-p 004bb000 00:1d 3221359467 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.4.so
2b6662b83000-2b6662ba9000 rw-p 2b6662b83000 00:00 0
2b6662ba9000-2b6663c3e000 r-xp 00000000 00:1d 3221359466 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.3.so
2b6663c3e000-2b6663e3e000 ---p 01095000 00:1d 3221359466 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.3.so
2b6663e3e000-2b6663e84000 rw-p 01095000 00:1d 3221359466 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.3.so
2b6663e84000-2b6663ee2000 rw-p 2b6663e84000 00:00 0
2b6663ee2000-2b666421a000 r-xp 00000000 00:1d 3221359465 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.2.so
2b666421a000-2b666441a000 ---p 00338000 00:1d 3221359465 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.2.so
2b666441a000-2b6664426000 rw-p 00338000 00:1d 3221359465 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.2.so
2b6664426000-2b666443c000 rw-p 2b6664426000 00:00 0
2b666443c000-2b666444f000 r-xp 00000000 00:1d 3221359248 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.1.so
2b666444f000-2b666464f000 ---p 00013000 00:1d 3221359248 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.1.so
2b666464f000-2b6664650000 rw-p 00013000 00:1d 3221359248 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.1.so
2b6664650000-2b6664988000 r-xp 00000000 00:1d 3221358615 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libbasic.so
2b6664988000-2b6664b88000 ---p 00338000 00:1d 3221358615 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libbasic.so
2b6664b88000-2b6664b97000 rw-p 00338000 00:1d 3221358615 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libbasic.so
2b6664b97000-2b6664bc2000 rw-p 2b6664b97000 00:00 0
2b6664bc2000-2b6664cfe000 r-xp 00000000 00:1d 3221358602 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libnumeric.so
2b6664cfe000-2b6664efd000 ---p 0013c000 00:1d 3221358602 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libnumeric.so
2b6664efd000-2b6664f03000 rw-p 0013b000 00:1d 3221358602 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libnumeric.so
2b6664f03000-2b6664f04000 rw-p 2b6664f03000 00:00 0
2b6664f04000-2b66651a1000 r-xp 00000000 00:1d 3221358601 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libutility.so
2b66651a1000-2b66653a0000 ---p 0029d000 00:1d 3221358601 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libutility.so
2b66653a0000-2b66653ac000 rw-p 0029c000 00:1d 3221358601 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libutility.so
2b66653ac000-2b66653e5000 r-xp 00000000 00:1d 3221358493 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libObjexxFCL.so
2b66653e5000-2b66655e5000 ---p 00039000 00:1d 3221358493 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libObjexxFCL.so
2b66655e5000-2b66655e7000 rw-p 00039000 00:1d 3221358493 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libObjexxFCL.so
2b66655fa000-2b66655fb000 rw-p 2b66655fa000 00:00 0
2b66655fb000-2b666562e000 r-xp 00000000 00:1d 2147714327 /data/mec/rosetta/rosetta_source/build/external/release/linux/2.6/64/x86/gcc/4.1/libcppdb.so
2b666562e000-2b666582d000 ---p 00033000 00:1d 2147714327 /data/mec/rosetta/rosetta_source/build/external/release/linux/2.6/64/x86/gcc/4.1/libcppdb.so
2b666582d000-2b666582f000 rw-p 00032000 00:1d 2147714327 /data/mec/rosetta/rosetta_source/build/external/release/linux/2.6/64/x86/gcc/4.1/libcppdb.so
2b666582f000-2b6665916000 r-xp 00000000 00:1d 2147714323 /data/mec/rosetta/rosetta_source/build/external/release/linux/2.6/64/x86/gcc/4.1/libsqlite3.so
2b6665916000-2b6665b16000 ---p 000e7000 00:1d 2147714323 /data/mec/rosetta/rosetta_source/build/external/release/linux/2.6/64/x86/gcc/4.1/libsqlite3.so
2b6665b16000-2b6665b19000 rw-p 000e7000 00:1d 2147714323 /data/mec/rosetta/rosetta_source/build/external/release/linux/2.6/64/x86/gcc/4.1/libsqlite3.so
2b6665b19000-2b6665d45000 rw-p 2b6665b19000 00:00 0
2b6665d69000-2b6665db2000 rw-p 2b6665d69000 00:00 0
2b6665f4a000-2b6670583000 rw-p 2b6665f4a000 00:00 0
7fff11bec000-7fff11c4f000 rw-p 7ffffff9b000 00:00 0 [stack]
ffffffffff600000-ffffffffffe00000 ---p 00000000 00:00 0 [vdso]
Got some signal... It is:6
Process was aborted!
*** glibc detected *** /data/mec/rosetta/rosetta_source/bin/minirosetta.linuxgccrelease: double free or corruption (out): 0x00000000288a2a20 ***
======= Backtrace: =========
/lib64/libc.so.6[0x3e0c07230f]
/lib64/libc.so.6(cfree+0x4b)[0x3e0c07276b]
/lib64/libc.so.6(exit+0xe5)[0x3e0c0333a5]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.1.so(_ZN9protocols3jd214JobDistributor18jd2_signal_handlerEi+0x7a)[0x2b6661e04e4a]
/lib64/libc.so.6[0x3e0c0302d0]
/lib64/libc.so.6(gsignal+0x35)[0x3e0c030265]
/lib64/libc.so.6(abort+0x110)[0x3e0c031d10]
/lib64/libc.so.6[0x3e0c06a84b]
/lib64/libc.so.6[0x3e0c07230f]
/lib64/libc.so.6(cfree+0x4b)[0x3e0c07276b]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.2.so(_ZNK4core10kinematics8FoldTree17setup_edge_countsEv+0xc65)[0x2b66640a0ca5]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.2.so(_ZN4core12conformation12Conformation9fold_treeERKNS_10kinematics8FoldTreeE+0xb2e)[0x2b666401b27e]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_g.4.so(_ZN9protocols20comparative_modeling14LoopRelaxMover5applyERN4core4pose4PoseE+0x9408)[0x2b665ec3a388]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_g.4.so(_ZN9protocols20comparative_modeling23LoopRelaxThreadingMover5applyERN4core4pose4PoseE+0x969)[0x2b665ec457b9]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.1.so(_ZN9protocols3jd214JobDistributor7go_mainEN7utility7pointer10owning_ptrINS_5moves5MoverEEE+0x106a)[0x2b6661e0caea]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.1.so(_ZN9protocols3jd224FileSystemJobDistributor2goEN7utility7pointer10owning_ptrINS_5moves5MoverEEE+0x34)[0x2b6661dff1e4]
/data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_g.4.so(_ZN9protocols20comparative_modeling7cm_mainEv+0x99)[0x2b665ec1fd19]
/data/mec/rosetta/rosetta_source/bin/minirosetta.linuxgccrelease[0x4031c8]
/lib64/libc.so.6(__libc_start_main+0xf4)[0x3e0c01d994]
/data/mec/rosetta/rosetta_source/bin/minirosetta.linuxgccrelease(__gxx_personality_v0+0x249)[0x4025e9]
======= Memory map: ========
00400000-00404000 r-xp 00000000 00:1d 3221359130 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/minirosetta.default.linuxgccrelease
00604000-00605000 rw-p 00004000 00:1d 3221359130 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/minirosetta.default.linuxgccrelease
00605000-00606000 rw-p 00605000 00:00 0
173f9000-3f0f9000 rw-p 173f9000 00:00 0 [heap]
3e0bc00000-3e0bc1c000 r-xp 00000000 08:01 2482554 /lib64/ld-2.5.so
3e0be1b000-3e0be1c000 r--p 0001b000 08:01 2482554 /lib64/ld-2.5.so
3e0be1c000-3e0be1d000 rw-p 0001c000 08:01 2482554 /lib64/ld-2.5.so
3e0c000000-3e0c14e000 r-xp 00000000 08:01 2482555 /lib64/libc-2.5.so
3e0c14e000-3e0c34d000 ---p 0014e000 08:01 2482555 /lib64/libc-2.5.so
3e0c34d000-3e0c351000 r--p 0014d000 08:01 2482555 /lib64/libc-2.5.so
3e0c351000-3e0c352000 rw-p 00151000 08:01 2482555 /lib64/libc-2.5.so
3e0c352000-3e0c357000 rw-p 3e0c352000 00:00 0
3e0cc00000-3e0cc82000 r-xp 00000000 08:01 2482558 /lib64/libm-2.5.so
3e0cc82000-3e0ce81000 ---p 00082000 08:01 2482558 /lib64/libm-2.5.so
3e0ce81000-3e0ce82000 r--p 00081000 08:01 2482558 /lib64/libm-2.5.so
3e0ce82000-3e0ce83000 rw-p 00082000 08:01 2482558 /lib64/libm-2.5.so
3e0d000000-3e0d014000 r-xp 00000000 08:01 270005 /usr/lib64/libz.so.1.2.3
3e0d014000-3e0d213000 ---p 00014000 08:01 270005 /usr/lib64/libz.so.1.2.3
3e0d213000-3e0d214000 rw-p 00013000 08:01 270005 /usr/lib64/libz.so.1.2.3
3e0e000000-3e0e00d000 r-xp 00000000 08:01 2482559 /lib64/libgcc_s-4.1.2-20080825.so.1
3e0e00d000-3e0e20d000 ---p 0000d000 08:01 2482559 /lib64/libgcc_s-4.1.2-20080825.so.1
3e0e20d000-3e0e20e000 rw-p 0000d000 08:01 2482559 /lib64/libgcc_s-4.1.2-20080825.so.1
3e0fc00000-3e0fce6000 r-xp 00000000 08:01 283492 /usr/lib64/libstdc++.so.6.0.8
3e0fce6000-3e0fee5000 ---p 000e6000 08:01 283492 /usr/lib64/libstdc++.so.6.0.8
3e0fee5000-3e0feeb000 r--p 000e5000 08:01 283492 /usr/lib64/libstdc++.so.6.0.8
3e0feeb000-3e0feee000 rw-p 000eb000 08:01 283492 /usr/lib64/libstdc++.so.6.0.8
3e0feee000-3e0ff00000 rw-p 3e0feee000 00:00 0
2b665bd22000-2b665bd24000 rw-p 2b665bd22000 00:00 0
2b665bd24000-2b665bfe5000 r-xp 00000000 00:1d 3221359489 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libdevel.so
2b665bfe5000-2b665c1e4000 ---p 002c1000 00:1d 3221359489 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libdevel.so
2b665c1e4000-2b665c1f4000 rw-p 002c0000 00:1d 3221359489 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libdevel.so
2b665c1f4000-2b665c214000 rw-p 2b665c1f4000 00:00 0
2b665c214000-2b665c24c000 r-xp 00000000 00:1d 3221359488 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.7.so
2b665c24c000-2b665c44b000 ---p 00038000 00:1d 3221359488 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.7.so
2b665c44b000-2b665c44e000 rw-p 00037000 00:1d 3221359488 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.7.so
2b665c44e000-2b665cabf000 r-xp 00000000 00:1d 3221359487 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.6.so
2b665cabf000-2b665ccbe000 ---p 00671000 00:1d 3221359487 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.6.so
2b665ccbe000-2b665ccdb000 rw-p 00670000 00:1d 3221359487 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.6.so
2b665ccdb000-2b665cd20000 rw-p 2b665ccdb000 00:00 0
2b665cd20000-2b665cea9000 r-xp 00000000 00:1d 3221359483 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_f.5.so
2b665cea9000-2b665d0a9000 ---p 00189000 00:1d 3221359483 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_f.5.so
2b665d0a9000-2b665d0b2000 rw-p 00189000 00:1d 3221359483 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_f.5.so
2b665d0b2000-2b665d0c5000 rw-p 2b665d0b2000 00:00 0
2b665d0c5000-2b665d178000 r-xp 00000000 00:1d 3221359485 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_e.5.so
2b665d178000-2b665d377000 ---p 000b3000 00:1d 3221359485 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_e.5.so
2b665d377000-2b665d37d000 rw-p 000b2000 00:1d 3221359485 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_e.5.so
2b665d37d000-2b665d382000 rw-p 2b665d37d000 00:00 0
2b665d382000-2b665d6f6000 r-xp 00000000 00:1d 3221359482 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_d.5.so
2b665d6f6000-2b665d8f5000 ---p 00374000 00:1d 3221359482 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_d.5.so
2b665d8f5000-2b665d903000 rw-p 00373000 00:1d 3221359482 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_d.5.so
2b665d903000-2b665d919000 rw-p 2b665d903000 00:00 0
2b665d919000-2b665d979000 r-xp 00000000 00:1d 3221359484 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_c.5.so
2b665d979000-2b665db79000 ---p 00060000 00:1d 3221359484 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_c.5.so
2b665db79000-2b665db7c000 rw-p 00060000 00:1d 3221359484 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_c.5.so
2b665db7c000-2b665db7f000 rw-p 2b665db7c000 00:00 0
2b665db7f000-2b665e064000 r-xp 00000000 00:1d 3221359486 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.5.so
2b665e064000-2b665e264000 ---p 004e5000 00:1d 3221359486 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.5.so
2b665e264000-2b665e283000 rw-p 004e5000 00:1d 3221359486 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.5.so
2b665e283000-2b665e2c2000 rw-p 2b665e283000 00:00 0
2b665e2c2000-2b665e423000 r-xp 00000000 00:1d 3221359481 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.5.so
2b665e423000-2b665e623000 ---p 00161000 00:1d 3221359481 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.5.so
2b665e623000-2b665e629000 rw-p 00161000 00:1d 3221359481 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.5.so
2b665e629000-2b665e636000 rw-p 2b665e629000 00:00 0
2b665e636000-2b665e8ac000 r-xp 00000000 00:1d 3221359475 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_h.4.so
2b665e8ac000-2b665eaac000 ---p 00276000 00:1d 3221359475 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_h.4.so
2b665eaac000-2b665eabb000 rw-p 00276000 00:1d 3221359475 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_h.4.so
2b665eabb000-2b665eae1000 rw-p 2b665eabb000 00:00 0
2b665eae1000-2b665ecef000 r-xp 00000000 00:1d 3221359480 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_g.4.so
2b665ecef000-2b665eeee000 ---p 0020e000 00:1d 3221359480 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_g.4.so
2b665eeee000-2b665eefa000 rw-p 0020d000 00:1d 3221359480 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_g.4.so
2b665eefa000-2b665ef0b000 rw-p 2b665eefa000 00:00 0
2b665ef0b000-2b665f08d000 r-xp 00000000 00:1d 3221359479 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_f.4.so
2b665f08d000-2b665f28c000 ---p 00182000 00:1d 3221359479 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_f.4.so
2b665f28c000-2b665f294000 rw-p 00181000 00:1d 3221359479 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_f.4.so
2b665f294000-2b665f29b000 rw-p 2b665f294000 00:00 0
2b665f29b000-2b665f366000 r-xp 00000000 00:1d 3221359474 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_e.4.so
2b665f366000-2b665f566000 ---p 000cb000 00:1d 3221359474 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_e.4.so
2b665f566000-2b665f569000 rw-p 000cb000 00:1d 3221359474 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_e.4.so
2b665f569000-2b665f56d000 rw-p 2b665f569000 00:00 0
2b665f56d000-2b665f5e2000 r-xp 00000000 00:1d 3221359472 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_d.4.so
2b665f5e2000-2b665f7e1000 ---p 00075000 00:1d 3221359472 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_d.4.so
2b665f7e1000-2b665f7e5000 rw-p 00074000 00:1d 3221359472 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_d.4.so
2b665f7e5000-2b665f7e8000 rw-p 2b665f7e5000 00:00 0
2b665f7e8000-2b665fa3e000 r-xp 00000000 00:1d 3221359477 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_c.4.so
2b665fa3e000-2b665fc3e000 ---p 00256000 00:1d 3221359477 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_c.4.so
2b665fc3e000-2b665fc48000 rw-p 00256000 00:1d 3221359477 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_c.4.so
2b665fc48000-2b665fc5f000 rw-p 2b665fc48000 00:00 0
2b665fc5f000-2b665fee5000 r-xp 00000000 00:1d 3221359478 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.4.so
2b665fee5000-2b66600e4000 ---p 00286000 00:1d 3221359478 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.4.so
2b66600e4000-2b66600f1000 rw-p 00285000 00:1d 3221359478 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.4.so
2b66600f1000-2b6660108000 rw-p 2b66600f1000 00:00 0
2b6660108000-2b66603bb000 r-xp 00000000 00:1d 3221359476 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.4.so
2b66603bb000-2b66605bb000 ---p 002b3000 00:1d 3221359476 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.4.so
2b66605bb000-2b66605c7000 rw-p 002b3000 00:1d 3221359476 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.4.so
2b66605c7000-2b66605d8000 rw-p 2b66605c7000 00:00 0
2b66605d8000-2b6661065000 r-xp 00000000 00:1d 3221359473 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.3.so
2b6661065000-2b6661264000 ---p 00a8d000 00:1d 3221359473 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.3.so
2b6661264000-2b6661296000 rw-p 00a8c000 00:1d 3221359473 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.3.so
2b6661296000-2b666133c000 rw-p 2b6661296000 00:00 0
2b666133c000-2b66613b2000 r-xp 00000000 00:1d 3221359471 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.2.so
2b66613b2000-2b66615b1000 ---p 00076000 00:1d 3221359471 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.2.so
2b66615b1000-2b66615b6000 rw-p 00075000 00:1d 3221359471 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_b.2.so
2b66615b6000-2b66615b9000 rw-p 2b66615b6000 00:00 0
2b66615b9000-2b6661886000 r-xp 00000000 00:1d 3221359470 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.2.so
2b6661886000-2b6661a85000 ---p 002cd000 00:1d 3221359470 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.2.so
2b6661a85000-2b6661a93000 rw-p 002cc000 00:1d 3221359470 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols_a.2.so
2b6661a93000-2b6661ab8000 rw-p 2b6661a93000 00:00 0
2b6661ab8000-2b6661f15000 r-xp 00000000 00:1d 3221359469 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.1.so
2b6661f15000-2b6662114000 ---p 0045d000 00:1d 3221359469 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.1.so
2b6662114000-2b666212e000 rw-p 0045c000 00:1d 3221359469 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libprotocols.1.so
2b666212e000-2b666215f000 rw-p 2b666212e000 00:00 0
2b666215f000-2b6662295000 r-xp 00000000 00:1d 3221359468 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.5.so
2b6662295000-2b6662494000 ---p 00136000 00:1d 3221359468 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.5.so
2b6662494000-2b666249c000 rw-p 00135000 00:1d 3221359468 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.5.so
2b666249c000-2b66624ac000 rw-p 2b666249c000 00:00 0
2b66624ac000-2b6662968000 r-xp 00000000 00:1d 3221359467 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.4.so
2b6662968000-2b6662b67000 ---p 004bc000 00:1d 3221359467 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.4.so
2b6662b67000-2b6662b83000 rw-p 004bb000 00:1d 3221359467 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.4.so
2b6662b83000-2b6662ba9000 rw-p 2b6662b83000 00:00 0
2b6662ba9000-2b6663c3e000 r-xp 00000000 00:1d 3221359466 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.3.so
2b6663c3e000-2b6663e3e000 ---p 01095000 00:1d 3221359466 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.3.so
2b6663e3e000-2b6663e84000 rw-p 01095000 00:1d 3221359466 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.3.so
2b6663e84000-2b6663ee2000 rw-p 2b6663e84000 00:00 0
2b6663ee2000-2b666421a000 r-xp 00000000 00:1d 3221359465 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.2.so
2b666421a000-2b666441a000 ---p 00338000 00:1d 3221359465 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.2.so
2b666441a000-2b6664426000 rw-p 00338000 00:1d 3221359465 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.2.so
2b6664426000-2b666443c000 rw-p 2b6664426000 00:00 0
2b666443c000-2b666444f000 r-xp 00000000 00:1d 3221359248 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.1.so
2b666444f000-2b666464f000 ---p 00013000 00:1d 3221359248 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.1.so
2b666464f000-2b6664650000 rw-p 00013000 00:1d 3221359248 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libcore.1.so
2b6664650000-2b6664988000 r-xp 00000000 00:1d 3221358615 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libbasic.so
2b6664988000-2b6664b88000 ---p 00338000 00:1d 3221358615 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libbasic.so
2b6664b88000-2b6664b97000 rw-p 00338000 00:1d 3221358615 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libbasic.so
2b6664b97000-2b6664bc2000 rw-p 2b6664b97000 00:00 0
2b6664bc2000-2b6664cfe000 r-xp 00000000 00:1d 3221358602 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libnumeric.so
2b6664cfe000-2b6664efd000 ---p 0013c000 00:1d 3221358602 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libnumeric.so
2b6664efd000-2b6664f03000 rw-p 0013b000 00:1d 3221358602 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libnumeric.so
2b6664f03000-2b6664f04000 rw-p 2b6664f03000 00:00 0
2b6664f04000-2b66651a1000 r-xp 00000000 00:1d 3221358601 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libutility.so
2b66651a1000-2b66653a0000 ---p 0029d000 00:1d 3221358601 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libutility.so
2b66653a0000-2b66653ac000 rw-p 0029c000 00:1d 3221358601 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libutility.so
2b66653ac000-2b66653e5000 r-xp 00000000 00:1d 3221358493 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libObjexxFCL.so
2b66653e5000-2b66655e5000 ---p 00039000 00:1d 3221358493 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libObjexxFCL.so
2b66655e5000-2b66655e7000 rw-p 00039000 00:1d 3221358493 /data/mec/rosetta/rosetta_source/build/src/release/linux/2.6/64/x86/gcc/4.1/libObjexxFCL.so
2b66655fa000-2b66655fb000 rw-p 2b66655fa000 00:00 0
2b66655fb000-2b666562e000 r-xp 00000000 00:1d 2147714327 /data/mec/rosetta/rosetta_source/build/external/release/linux/2.6/64/x86/gcc/4.1/libcppdb.so
2b666562e000-2b666582d000 ---p 00033000 00:1d 2147714327 /data/mec/rosetta/rosetta_source/build/external/release/linux/2.6/64/x86/gcc/4.1/libcppdb.so
2b666582d000-2b666582f000 rw-p 00032000 00:1d 2147714327 /data/mec/rosetta/rosetta_source/build/external/release/linux/2.6/64/x86/gcc/4.1/libcppdb.so
2b666582f000-2b6665916000 r-xp 00000000 00:1d 2147714323 /data/mec/rosetta/rosetta_source/build/external/release/linux/2.6/64/x86/gcc/4.1/libsqlite3.so
2b6665916000-2b6665b16000 ---p 000e7000 00:1d 2147714323 /data/mec/rosetta/rosetta_source/build/external/release/linux/2.6/64/x86/gcc/4.1/libsqlite3.so
2b6665b16000-2b6665b19000 rw-p 000e7000 00:1d 2147714323 /data/mec/rosetta/rosetta_source/build/external/release/linux/2.6/64/x86/gcc/4.1/libsqlite3.so
2b6665b19000-2b6665d45000 rw-p 2b6665b19000 00:00 0
2b6665d69000-2b6665db2000 rw-p 2b6665d69000 00:00 0
2b6665f4a000-2b6670583000 rw-p 2b6665f4a000 00:00 0
7fff11bec000-7fff11c4f000 rw-p 7ffffff9b000 00:00 0 [stack]
ffffffffff600000-ffffffffffe00000 ---p 00000000 00:00 0 [vdso]
Got some signal... It is:6
Process was aborted!
[ra1451@compute-0-0 cm_tutorial]$

Steps To Reproduce

Command with options:

~/apps/rosetta/rosetta_source/bin/minirosetta.linuxgccrelease -run:protocol threading -database ~/apps/rosetta/rosetta_database/ -in:file:alignment template_target_short.aln -cm:aln_format general -frag3 frags3_sample.200.fsc -frag9 frags9_sample.200.fsc -in:file:fasta target.fasta.full_length -in:file:fullatom -loops:frag_sizes 9 3 1 -loops:frag_files frags9_sample.200.fsc frags3_sample.200.fsc none -in:file:psipred_ss2 t000_.psipred_ss2 -in:file:fullatom -out:nstruct 10 -in:file:template_pdb 2ast.pdb -loops:extended -loops:build_initial -loops:remodel quick_ccd -loops:refine refine_ccd -silent_decoytime -random_grow_loops_by 4 -select_best_loop_from 1 -out:file:fullatom -out:output -out:file:scorefile threaded_model.fasc -run:constant_seed -run:jran 1111111 -overwrite -out:pdb -ignore_unrecognized_res

Notes
(0000043) smlewis (Administrator) 2012-08-02 10:03	Can you be more specific about which demo this came from?

(0000048) ralford (Developer) 2012-08-03 18:21	the demo found in the latest revision /path/to/rosetta/rosetta_demos/homology_modeling_basic

Issue History
Date Modified	Username	Field	Change
2012-08-02 01:16	ralford	New Issue
2012-08-02 10:03	smlewis	Note Added: 0000043
2012-08-03 18:21	ralford	Note Added: 0000048

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