0000048: Random crashes from out-of-range residue access in VIP

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Project

Category

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Date Submitted

Last Update

0000048

Rosetta

[All Projects] Crash

public

2012-07-26 12:41

2012-08-13 15:16

Reporter

smlewis

Assigned To

bborgo

Priority

low

Severity

minor

Reproducibility

random

Status

assigned

Resolution

open

Platform

OS Version

Product Version

3.4

Fixed in Version

Summary

0000048: Random crashes from out-of-range residue access in VIP

Description

http://www.rosettacommons.org/content/rosettavip-error-seqpos-size [^]

A request for inputs (for verification and debugging) is pending.

The immediate error is a residue out of range error:

ERROR: seqpos <= size()
ERROR:: Exit from: src/core/conformation/Conformation.hh line: 289

Something may be going wrong in a residue replacement somewhere:
---------------------------------------------------
Total weighted score: -255.319
VIP: Comparing new energy 1.73326e-316 with old energy -255.193
VIP: Rejecting attempted mutation - finished!

Tags

No tags attached.

Application(s) Affected

VIP

Command Line Used

vip.linuxgccrelease -s mypdb -cp:cutoff 6.0 -sasa_calculator_probe_radius 1.0 -cp:output myoutput -cp:print_reports

Developer Options

Fixed in SVN Version

Attached Files

Relationships

Notes
(0000038) smlewis (Administrator) 2012-07-26 12:43	I suspect this should be assigned to Ben Borgo but he's not on Mantis yet.

Issue History
Date Modified	Username	Field	Change
2012-07-26 12:41	smlewis	New Issue
2012-07-26 12:43	smlewis	Note Added: 0000038
2012-08-13 15:16	bborgo	Assigned To	=> bborgo
2012-08-13 15:16	bborgo	Priority	normal => low
2012-08-13 15:16	bborgo	Status	new => assigned