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| ID | Project | Category | View Status | Date Submitted | Last Update | ||||
| 0000045 | Rosetta | [All Projects] Crash | public | 2012-07-18 14:15 | 2012-07-19 08:53 | ||||
| Reporter | kdrew | ||||||||
| Assigned To | kdrew | ||||||||
| Priority | normal | Severity | minor | Reproducibility | sometimes | ||||
| Status | resolved | Resolution | fixed | ||||||
| Platform | x86 | OS | OS X | OS Version | 10.6 | ||||
| Product Version | All | ||||||||
| Fixed in Version | |||||||||
| Summary | 0000045: Assertion failed | ||||||||
| Description | I get an assertion failure during rotamer trials. The molecule has extra connections and pseudobonds. It does not seem to fail during all rotamer trials but it is reproducible given a constant seed. -snip- Assertion failed: (connection_gaps_.size() == at2dat.conn_dat( res2_cpdat_ ).size()), function operator(), file src/core/scoring/etable/etrie/TrieCountPairGeneric.hh, line 93. -snip- | ||||||||
| Steps To Reproduce | -commandline- ./rosetta/rosetta_source/bin/oop_dock_design.macosgccdebug @flags -database ./rosetta/rosetta_git/rosetta/rosetta_database -commandline- Uploaded is pdb file. -flags file- -s ./mdm2_oopFWFL_initial_4th_altered.pdb -nstruct 1 -constraints::cst_fa_file ./constraint_file -constraints::cst_fa_weight 1 -resfile ./mdm2_oop_interface_FWFL.res -in:file:fullatom -pert_num 10 -pert_pep_num_rep 10 -final_design_min false -dock_design_loop_num 10 -oop_positions 86 88 -packing:linmem_ig 10 -constant_seed true -jran -103337249 -flags file- -res file- NATRO EX 1 EX 2 EX 3 EX 4 EX_CUTOFF 0 USE_INPUT_SC start #kdrew: these are oop positions 2 B NATAA 3 B NATAA 4 B NATAA 5 B NATAA -res file- -constraints file- AtomPair CYP 2B CZP 3B HARMONIC 1.52 0.05 AtomPair CYP 4B CZP 5B HARMONIC 1.52 0.05 -constraints file- | ||||||||
| Additional Information | Already tracked down where the problem is. Committing soon. | ||||||||
| Tags | No tags attached. | ||||||||
| Application(s) Affected | oop_dock_design | ||||||||
| Command Line Used | ./rosetta/rosetta_source/bin/oop_dock_design.macosgccdebug @flags -database ./rosetta/rosetta_git/rosetta/rosetta_database | ||||||||
| Developer Options | |||||||||
| Fixed in SVN Version | 49998 | ||||||||
| Attached Files |  mdm2_oopFWFL_initial_4th_altered.pdb [^] (124,934 bytes) 2012-07-18 14:15 | ||||||||
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Issue History |
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| Date Modified | Username | Field | Change |
| 2012-07-18 14:15 | kdrew | New Issue | |
| 2012-07-18 14:15 | kdrew | Status | new => assigned |
| 2012-07-18 14:15 | kdrew | Assigned To | => kdrew |
| 2012-07-18 14:15 | kdrew | File Added: mdm2_oopFWFL_initial_4th_altered.pdb | |
| 2012-07-18 14:17 | AndrewLeaverFay | Assigned To | kdrew => AndrewLeaverFay |
| 2012-07-19 08:52 | smlewis | Fixed in SVN Version | => 49998 |
| 2012-07-19 08:52 | smlewis | Note Added: 0000029 | |
| 2012-07-19 08:52 | smlewis | Status | assigned => resolved |
| 2012-07-19 08:52 | smlewis | Resolution | open => fixed |
| 2012-07-19 08:52 | smlewis | Assigned To | AndrewLeaverFay => kdrew |
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Issue History |
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