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IDProjectCategoryView StatusDate SubmittedLast Update
0000043PyRosetta[All Projects] Bad Codingpublic2012-07-16 17:242012-08-04 10:33
Assigned ToSergey 
PlatformAll platformsOSAnyOS VersionAny
Product Version[Rosetta] Trunk 
Fixed in Version 
Summary0000043: Feature Request: Ability to provide custom names for custom score terms in PyRosetta
DescriptionCurrently, if one creates a custom scoring method in PyRosetta, the name of the scoring type/term is automatically assigned by the EnergyMethod()() decorator found in (The name assigned is "PyRosettaEnergy_first", "PyRosettaEnergy_last", or "PyRosettaEnergy_XXX", where XXX is an integer between 256 and 265.) It would be more helpful to name the term to match what the scoring method is actually doing.
Steps To Reproduce>>>from rosetta import *
>>>import rosetta.core.scoring.methods as methods
...class LengthScoreMethod(methods.ContextIndependentOneBodyEnergy):
... def __init__(self): methods.ContextIndependentOneBodyEnergy.__init__(self, self.creator())
... def residue_energy(self, res, pose, emap): emap.get().set(self.scoreType, 1.0)
>>>pose = pose_from_sequence("ACDEFGHI")
>>>sf = ScoreFunction()
>>>len_score = LengthScoreMethod.scoreType
>>>sf.set_weight(len_score, 1.0)
 Scores Weight Raw Score Wghtd.Score
 PyRosettaEnergy_257 1.000 8.000 8.000
 Total weighted score: 8.000
Additional Information(Technically, this is not an issue of "bad coding", but there is no category option for "feature request".)
TagsNo tags attached.
Application(s) AffectedPyRosetta
Command Line Usedsee "Steps To Reproduce" above
Developer Options
Fixed in SVN Version
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- Issue History
Date Modified Username Field Change
2012-07-16 17:24 Labonte New Issue
2012-07-16 17:24 Labonte Status new => assigned
2012-07-16 17:24 Labonte Assigned To => Sergey
2012-07-16 17:26 Labonte Tag Attached: PyRosetta
2012-07-18 12:59 mpacella Status assigned => confirmed
2012-08-03 14:04 delucasl Project Rosetta => PyRosetta
2012-08-04 10:32 Sergey Tag Detached: PyRosetta
2012-08-04 10:33 Sergey Product Version => Trunk

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