Mantis Bug Tracker

View Issue Details Jump to Notes ] Issue History ] Print ]
IDProjectCategoryView StatusDate SubmittedLast Update
0000358Rosetta[All Projects] Incorrect Resultspublic2015-03-09 19:352015-03-09 19:35
ReporterAndrewLeaverFay 
Assigned ToAndrewLeaverFay 
PrioritynormalSeveritymajorReproducibilityalways
StatusassignedResolutionopen 
PlatformAll platformsOSAnyOS VersionAny
Product VersionTrunk 
Fixed in Version 
Summary0000358: new etables keep being created in optE
DescriptionOptE started chewing up a lot of memory when the analytic etable was not being used; a quick bit of cout debugging showed that a new etable was getting created for each design job. Something fishy is going on in the way etables are retrieved from the scoring manager. The likely culprit is the EtableOptions::operator ==.
Steps To ReproduceRun optE with the restore_pre_talaris_2013_behavior flag; it'll chew up memory in a few iterations.
Additional Information$ cat score.flags
-database /nas02/home/l/e/leaverfa/GIT/main/database
-restore_pre_talaris_2013_behavior
-fa_max_dis 6.0
-score::bonded_params 300 150 40 40 40
-scale_d 1
-scale_theta 1
-scale_rb 1

...

$ cat optE_seqprof.flags
-s /nas02/home/l/e/leaverfa/optE/input_files/jsr55/interlaced_jsr54.list
-optE::optimize_nat_aa
-ignore_unrecognized_res
-mute all
# -ex1
# -ex2
-linmem_ig 10
-optE:free free_wts.txt
-optE:fixed fixed_wts.txt
-unmute protocols.optimize_weights.IterativeOptEDriver core.pack.min_pack core.init core.scoring.etable
-no_optH true
-skip_set_reasonable_fold_tree
-optimize_starting_free_weights
-mpi_weight_minimization
-optE:fit_reference_energies_to_aa_profile_recovery
#-optE::design_with_minpack # use regular linmem-ig redesign
-starting_refEs score12prime.wts
-optE:no_design_pdb_output
-n_design_cycles 12
-mpi_tracer_to_file testing
TagsNo tags attached.
Application(s) Affectedall
Command Line Used/nas02/home/l/e/leaverfa/GIT/main/source/bin/optE_parallel.mpi.linuxgccrelease @optE_seqprof.flags @score.flags
Developer Options
Fixed in SVN Version
Attached Files

- Relationships

-  Notes
There are no notes attached to this issue.

- Issue History
Date Modified Username Field Change
2015-03-09 19:35 AndrewLeaverFay New Issue
2015-03-09 19:35 AndrewLeaverFay Status new => assigned
2015-03-09 19:35 AndrewLeaverFay Assigned To => AndrewLeaverFay


Copyright © 2000 - 2012 MantisBT Group
Powered by Mantis Bugtracker