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ID | Project | Category | View Status | Date Submitted | Last Update | ||||||||
0000358 | Rosetta | [All Projects] Incorrect Results | public | 2015-03-09 19:35 | 2015-03-09 19:35 | ||||||||
Reporter | AndrewLeaverFay | ||||||||||||
Assigned To | AndrewLeaverFay | ||||||||||||
Priority | normal | Severity | major | Reproducibility | always | ||||||||
Status | assigned | Resolution | open | ||||||||||
Platform | All platforms | OS | Any | OS Version | Any | ||||||||
Product Version | Trunk | ||||||||||||
Fixed in Version | |||||||||||||
Summary | 0000358: new etables keep being created in optE | ||||||||||||
Description | OptE started chewing up a lot of memory when the analytic etable was not being used; a quick bit of cout debugging showed that a new etable was getting created for each design job. Something fishy is going on in the way etables are retrieved from the scoring manager. The likely culprit is the EtableOptions::operator ==. | ||||||||||||
Steps To Reproduce | Run optE with the restore_pre_talaris_2013_behavior flag; it'll chew up memory in a few iterations. | ||||||||||||
Additional Information | $ cat score.flags -database /nas02/home/l/e/leaverfa/GIT/main/database -restore_pre_talaris_2013_behavior -fa_max_dis 6.0 -score::bonded_params 300 150 40 40 40 -scale_d 1 -scale_theta 1 -scale_rb 1 ... $ cat optE_seqprof.flags -s /nas02/home/l/e/leaverfa/optE/input_files/jsr55/interlaced_jsr54.list -optE::optimize_nat_aa -ignore_unrecognized_res -mute all # -ex1 # -ex2 -linmem_ig 10 -optE:free free_wts.txt -optE:fixed fixed_wts.txt -unmute protocols.optimize_weights.IterativeOptEDriver core.pack.min_pack core.init core.scoring.etable -no_optH true -skip_set_reasonable_fold_tree -optimize_starting_free_weights -mpi_weight_minimization -optE:fit_reference_energies_to_aa_profile_recovery #-optE::design_with_minpack # use regular linmem-ig redesign -starting_refEs score12prime.wts -optE:no_design_pdb_output -n_design_cycles 12 -mpi_tracer_to_file testing | ||||||||||||
Tags | No tags attached. | ||||||||||||
Application(s) Affected | all | ||||||||||||
Command Line Used | /nas02/home/l/e/leaverfa/GIT/main/source/bin/optE_parallel.mpi.linuxgccrelease @optE_seqprof.flags @score.flags | ||||||||||||
Developer Options | |||||||||||||
Fixed in SVN Version | |||||||||||||
Attached Files | |||||||||||||
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Date Modified | Username | Field | Change |
2015-03-09 19:35 | AndrewLeaverFay | New Issue | |
2015-03-09 19:35 | AndrewLeaverFay | Status | new => assigned |
2015-03-09 19:35 | AndrewLeaverFay | Assigned To | => AndrewLeaverFay |
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