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IDProjectCategoryView StatusDate SubmittedLast Update
0000033Rosetta[All Projects] Bad Codingpublic2012-07-01 11:322013-03-01 09:57
Reporterolange 
Assigned ToSergey 
PrioritynormalSeverityminorReproducibilityalways
StatusresolvedResolutionduplicate 
PlatformOSOS Version
Product Version 
Fixed in Version 
Summary0000033: integration tests spawned subprocesses are not killed properly
DescriptionThe integration.py starts a number of subprocesses with the actual rosetta commands.
A) the integration.py does not respond properly to ^C
B) if integration.py gets killed it should also remove all its child processes.

this can cause problem on larger systems where a multitude of such jobs is then floating around
 
TagsNo tags attached.
Application(s) Affecteddevelopment
Command Line Usedpython integration.py -j 48
Developer Options
Fixed in SVN Version51417
Attached Files

- Relationships
related to 0000026resolvedSergey integration.py hangs w/ one job that never starts 

-  Notes
(0000019)
rmoretti (Attentive Developer)
2012-07-01 11:49

This sounds like a duplicate of Bug 26 (https://carbon.structbio.vanderbilt.edu/mantisbt/view.php?id=26 [^]), which was sort-of resolved with r49614 - as long as you're willing to use python 3.

See also Andrew's email on June 26.
(0000020)
smlewis (Administrator)
2012-07-02 09:04

Duplicate of 0000026; https://carbon.structbio.vanderbilt.edu/mantisbt/view.php?id=26 [^]
(0000113)
Sergey (Administrator)
2012-10-02 13:37

Oliver, my 'Fork' path in 51417 should fix this, let me know if this is still a problem.

- Issue History
Date Modified Username Field Change
2012-07-01 11:32 olange New Issue
2012-07-01 11:49 rmoretti Note Added: 0000019
2012-07-02 09:04 smlewis Fixed in SVN Version => 49614
2012-07-02 09:04 smlewis Note Added: 0000020
2012-07-02 09:04 smlewis Status new => closed
2012-07-02 09:04 smlewis Assigned To => AndrewLeaverFay
2012-07-02 09:04 smlewis Resolution open => duplicate
2012-10-02 13:34 Sergey Relationship added related to 0000026
2012-10-02 13:36 Sergey Assigned To AndrewLeaverFay => Sergey
2012-10-02 13:36 Sergey Status closed => assigned
2012-10-02 13:37 Sergey Fixed in SVN Version 49614 => 51417
2012-10-02 13:37 Sergey Note Added: 0000113
2012-10-02 13:37 Sergey Status assigned => resolved
2013-03-01 09:57 smlewis Relationship added related to 0000185
2013-03-01 09:57 smlewis Relationship deleted related to 0000185


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