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IDProjectCategoryView StatusDate SubmittedLast Update
0000325Rosetta[All Projects] Input Handlingpublic2014-02-26 15:352014-02-26 15:35
Assigned To 
PlatformAll platformsOSAnyOS VersionAny
Product VersionTrunk 
Fixed in Version 
Summary0000325: non-cannonical AA at terminal position causes incorrect chain identification
DescriptionIf loading a PDB with an ignored non-cannonical terminal residue, such as PCA, Rosetta will incorrectly identify the chain of the next set of residues, such that those residues will be a part of the previous chain. Foldtree is correctly identified. For example, a two chain pose will be one chain in Rosetta.
Steps To ReproduceLoad the file into PyRosetta with -ignore_unrecognized_res, query the number of chains in the pose.
Additional InformationPCA is pyrrolidone carboxylic acid. Removing this residue from the PDB file makes it load correctly.
TagsNo tags attached.
Application(s) AffectedMany depending on context
Command Line Usedrosetta_scripts.linuxclangrelease -database $ROSETTA3/database -parser:protocol LH_interface_general.xml @LH_interface_analysis.flag -l $dir/$ss/full_PDBLIST_heavy_culled.txt -parser:script_vars sep=$sep tog=$tog name=LH_Fv_repack_both.sasafix score=$scor
Developer Options
Fixed in SVN Version
Attached Files? file icon 3twcL-3twcH.pdb [^] (238,922 bytes) 2014-02-26 15:35

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- Issue History
Date Modified Username Field Change
2014-02-26 15:35 jadolfbr New Issue
2014-02-26 15:35 jadolfbr File Added: 3twcL-3twcH.pdb

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