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| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0000312 | Rosetta | [All Projects] Crash | public | 2013-11-19 10:17 | 2013-11-19 10:17 |
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| Reporter | rmoretti | |
| Assigned To | | |
| Priority | normal | Severity | minor | Reproducibility | always |
| Status | new | Resolution | open | |
| Platform | | OS | | OS Version | |
| Product Version | | |
| Fixed in Version | | |
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| Summary | 0000312: CstfileToTheozymePDB results in segmentation fault for secondary constraints. |
| Description | If you pass a constraint file with a secondary constraint with less than six degrees of freedom, CstfileToTheozymePDB can segfault.
Although CstfileToTheozymePDB needs to have all six degrees of freedom specified, it should give a useful error message to that effect and gracefully exit, rather than segfaulting. |
| Steps To Reproduce | Go to Rosetta/demos/public/enzyme_design
Run
../../../main/source/bin/CstfileToTheozymePDB.linuxgccdebug -extra_res_fa rosetta_inputs/1n1.params -match:geometric_constraint_file rosetta_inputs/mocktim.cst
Note that this is the full mocktim.cst constraint file, rather than the cut down mocktim_first_2interactions_example.cst constraint file that the demo normally passes to CstfileToTheozymePDB
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| Additional Information | Thanks to Guanlin Li from the November 2013 Rosetta Workshop at Vanderbilt for finding this bug. |
| Tags | No tags attached. |
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| Application(s) Affected | CstfileToTheozymePDB |
| Command Line Used | ../../../main/source/bin/CstfileToTheozymePDB.linuxgccdebug -extra_res_fa rosetta_inputs/1n1.params -match:geometric_constraint_file rosetta_inputs/mocktim.cst |
| Developer Options | Confirmed As Bug |
| Fixed in SVN Version | |
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| Attached Files | |
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