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IDProjectCategoryView StatusDate SubmittedLast Update
0000310Rosetta[All Projects] Crashpublic2013-10-30 18:212013-10-31 08:56
Reporteramelie 
Assigned Toamelie 
PrioritynormalSeveritycrashReproducibilityalways
StatusassignedResolutionopen 
PlatformAll platformsOSAnyOS VersionAny
Product VersionTrunk 
Fixed in Version 
Summary0000310: loop modeling crashes on some input (e.g. 1ivd)
DescriptionKIC crashes on 1ivd after (or while) switching to centroid but before starting any actual loop modeling. Haven't tested other protocols (like CCD).
Additional InformationThis seems to be an issue with the HETATMs -- if stripping out all non-ATOM lines the structure is handled just fine. Somewhat surprisingly -ignore_unrecognized_res does not fix this problem. No .params files for specific ligands were supplied.
TagsNo tags attached.
Application(s) Affectedloopmodel
Command Line Usedloopmodel -loops:remodel perturb_kic -loops:refine refine_kic
Developer Options
Fixed in SVN Version
Attached Files

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-  Notes
(0000320)
rmoretti (Attentive Developer)
2013-10-31 08:56

It's probably worth noting that the HETATMs in question are for glycosylation.

Jason Labonte has been working on incorporating glycosylation loading into Rosetta - that's probably why the -ignore_unrecognized_res doesn't do anything, as the glycosylation is recognized -- in full atom mode. Likely those glycosylated residues do not yet have a centroid representation.

- Issue History
Date Modified Username Field Change
2013-10-30 18:21 amelie New Issue
2013-10-30 18:21 amelie Status new => assigned
2013-10-30 18:21 amelie Assigned To => amelie
2013-10-30 18:24 amelie Description Updated View Revisions
2013-10-31 08:56 rmoretti Note Added: 0000320


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