0000296: kink_cation_residue gives incorrect result if AbInfo is using ModifiedAHO numbering scheme - MantisBT

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ID

Project

Category

View Status

Date Submitted

Last Update

0000296

Rosetta

[All Projects] Incorrect Results

public

2013-08-08 15:21

2014-01-09 17:55

Reporter

jgray

Assigned To

jadolfbr

Priority

normal

Severity

minor

Reproducibility

always

Status

resolved

Resolution

open

Platform

All platforms

OS

Any

OS Version

Any

Product Version

Trunk

Fixed in Version

Trunk

Summary

0000296: kink_cation_residue gives incorrect result if AbInfo is using ModifiedAHO numbering scheme

Description

cdr_numbering_ was meant to be a set of landmark positions from which other positions can be abstracted. but it is also being used to define different stretches of loop, which makes it non-absolute.

probably need a cdr_landmarks_, and some separation of NumberingScheme idea and LoopDefinition idea

Steps To Reproduce

uncomment line in AntibodyInfoTest.cxxtest.cc

Tags

No tags attached.

Application(s) Affected

antibody

Command Line Used

test/run.py -1 AntibodyInfoTest

Developer Options

Confirmed As Bug

Fixed in SVN Version

56176

Relationships

Notes
(0000323) jadolfbr (Administrator) 2013-12-04 14:52	Fixed in jadolfbr/schemes. Awaiting a strange bug unrelated to changed code to push to trunk.

(0000325) jadolfbr (Administrator) 2014-01-09 17:55	AntibodyInfo now requires a numbering scheme and a definition. Metrics can now specify which definition they are referring to, and conversion happens when using a different definition. Apps now require a numbering scheme and definition on the cmd line. http://rosettatests.graylab.jhu.edu/rev?id=56176 [^]

Issue History
Date Modified	Username	Field	Change
2013-08-08 15:21	jgray	New Issue
2013-08-08 15:21	jgray	Status	new => assigned
2013-08-08 15:21	jgray	Assigned To	=> jadolfbr
2013-12-04 14:52	jadolfbr	Note Added: 0000323
2014-01-09 17:55	jadolfbr	Fixed in SVN Version	=> 56176
2014-01-09 17:55	jadolfbr	Note Added: 0000325
2014-01-09 17:55	jadolfbr	Status	assigned => resolved
2014-01-09 17:55	jadolfbr	Fixed in Version	=> Trunk

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