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IDProjectCategoryView StatusDate SubmittedLast Update
0000294Rosetta[All Projects] Crashpublic2013-07-25 10:222013-08-17 13:39
Assigned Tosarel 
PlatformAll platformsOSAnyOS VersionAny
Product Version 
Fixed in Version 
Summary0000294: AtomTree mover in rosetta scripts seg faults for residues with less than 4 atoms
DescriptionThe AtomTree mover in rosetta scripts crashes on residues with < 4 residues like metals or water.
Steps To ReproduceInput is a pdb containing a protein and also residues with less than 4 atoms in their param file (ex: metal ions, water).

Running a rosetta script that only applies the AtomTree mover results in a seg fault.

I've tried this with MG and TP3 water with the simple_ft and docking_ft options.
Additional InformationThe seg fault happens in Conformation::get_torsion_angle_atom_ids() when the residue is unable to return four atoms to define a "mainchain" torsion
TagsNo tags attached.
Application(s) Affectedrosetta_scripts
Command Line Usedrosetta_scripts.mpipostgres.macosgccrelease
Developer Options
Fixed in SVN Version
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- Issue History
Date Modified Username Field Change
2013-07-25 10:22 khouli New Issue
2013-08-17 13:39 khouli Assigned To => sarel
2013-08-17 13:39 khouli Status new => assigned
2013-08-17 13:39 khouli Steps to Reproduce Updated View Revisions

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