0000284: Docking Protocol Segfaults when Passed Symmetry Flags

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Date Submitted

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0000284

Rosetta

[All Projects] Input Handling

public

2013-06-19 10:12

Reporter

ralford

Assigned To

Priority

normal

Severity

minor

Reproducibility

always

Status

new

Resolution

open

Platform

All platforms

Any

OS Version

Any

Product Version

Trunk

Fixed in Version

Summary

0000284: Docking Protocol Segfaults when Passed Symmetry Flags

Description

in the user documentation, it is defined that the Docking protocol does not support symmetry (symmetry definition files, etc) and to use the symmetric docking protocol instead. However, if in error, symmetry options are passed to Docking, Docking will throw an error and segfault. Docking should just throw an error and not crash in that way.

Steps To Reproduce

PDB: 1afo.pdb (Glycophorin A)

Run Command: docking_protocol.macosgccrelease -database /path/to/db @flags

Contents of Flags File:
# Input Option Group
-s 1afoA_relaxed.pdb
-run:constant_seed
-out:nstruct 1
#
# Docking Options
-docking:partners A_B
-dock_pert 3 8
-run:max_retry_job 10
-docking:sc_min
-packing:ex1
-packing:ex2aro
#
# Symmetry Options
-symmetry:symmetry_definition ../1afo.c2.symm
-symmetry:initialize_rigid_body_dofs
-symmetry:symmetric_rmsd
#
# Add scoring options
-evaluation:gdtmm
-evaluation:rmsd
-overwrite

Issue History
Date Modified	Username	Field	Change
2013-06-19 10:12	ralford	New Issue

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