| View Issue Details [ Jump to Notes ] | [ Issue History ] [ Print ] |
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0000249 | Rosetta | [All Projects] Incorrect Results | public | 2013-04-11 15:14 | 2013-04-11 15:14 |
|
| Reporter | smlewis | |
| Assigned To | | |
| Priority | normal | Severity | minor | Reproducibility | always |
| Status | new | Resolution | open | |
| Platform | | OS | | OS Version | |
| Product Version | 3.4 | |
| Fixed in Version | | |
|
| Summary | 0000249: -select_best_loops_from associated with ludicrous models (user report for 3.4) |
| Description | https://www.rosettacommons.org/node/3231#comment-6032 [^]
Basically, this user has a command line and input set (command line is in thread) that results in some reasonable models, and some models with broken sidechains - CB-xG bond vector distances are 20 angstroms or more.
The user reports that the problem is more frequent with larger values of -select_best_loops_from. This implies to me that something is remembering rotamers/sidechains/atom coordinates it should not, and re-threading wrong rotamers after some centroid-fullatom step. |
| Tags | No tags attached. |
|
| Application(s) Affected | minirosetta -protocol threading |
| Command Line Used | minirosetta -protocol threading |
| Developer Options | |
| Fixed in SVN Version | |
|
| Attached Files | |
|
Relationships 
Relationships