Mantis Bug Tracker

View Issue Details Jump to Notes ] Issue History ] Print ]
IDProjectCategoryView StatusDate SubmittedLast Update
0000249Rosetta[All Projects] Incorrect Resultspublic2013-04-11 15:142013-04-11 15:14
Assigned To 
PlatformOSOS Version
Product Version3.4 
Fixed in Version 
Summary0000249: -select_best_loops_from associated with ludicrous models (user report for 3.4)
Description [^]

Basically, this user has a command line and input set (command line is in thread) that results in some reasonable models, and some models with broken sidechains - CB-xG bond vector distances are 20 angstroms or more.

The user reports that the problem is more frequent with larger values of -select_best_loops_from. This implies to me that something is remembering rotamers/sidechains/atom coordinates it should not, and re-threading wrong rotamers after some centroid-fullatom step.
TagsNo tags attached.
Application(s) Affectedminirosetta -protocol threading
Command Line Usedminirosetta -protocol threading
Developer Options
Fixed in SVN Version
Attached Files

- Relationships
related to 0000230newsmlewis LoopMover_CCD (perturb_CCD) does not allow terminal loops; appears to be typo 

-  Notes
There are no notes attached to this issue.

- Issue History
Date Modified Username Field Change
2013-04-11 15:14 smlewis New Issue
2013-04-11 15:14 smlewis Relationship added related to 0000230

Copyright © 2000 - 2012 MantisBT Group
Powered by Mantis Bugtracker