Mantis Bug Tracker

View Issue Details Jump to Notes ] Issue History ] Print ]
IDProjectCategoryView StatusDate SubmittedLast Update
0000247Rosetta[All Projects] Bad Codingpublic2013-04-09 10:312013-10-11 13:45
Assigned Tormoretti 
PlatformOSOS Version
Product Version 
Fixed in Version 
Summary0000247: performance benchmark needs retuning
DescriptionThe performance benchmark needs retuning to have on the order of 10 seconds per test. Currently around half are under 1 second.
Additional InformationHere's how to do it:

It's in src/apps/benchmark/performance/ScoreEach.bench.hh. The ScoreEach instance is delcared here:

ScoreEachBenchmark Score_hpatch_("core.scoring.Score_100x_hpatch",hpatch,100);

The test activates the hpatch score term and then scores a fixed structure repeatedly. All that has to happen is that the number of repeats needs to be increased from its current value -- 100 -- to some larger one.

TagsNo tags attached.
Application(s) Affectedperformance benchmark (email)
Command Line UsedN/A
Developer Options
Fixed in SVN Version30259bba8f
Attached Files

- Relationships

-  Notes
rmoretti (Attentive Developer)
2013-05-19 14:40

I took a look at this - there's a bunch of score terms that are running insanely fast because the test protein isn't correctly set up for the score terms to do anything useful with them.

For example, there's no disulfides (so disulfide terms are very rapid), and there's no DNA/RNA, so things like dna_chi are exceedingly fast. I haven't checked all the very fast terms, but my guess is that there's some setup involved with those scoreterms which means we're not effectively profiling them, instead profiling an always-will-give-zero-energy code path.

We probably will need to add some custom protein loading to some of them to get timings that are actually meaningful.

- Issue History
Date Modified Username Field Change
2013-04-09 10:31 smlewis New Issue
2013-05-19 14:40 rmoretti Note Added: 0000301
2013-10-11 13:45 rmoretti Fixed in SVN Version => 30259bba8f
2013-10-11 13:45 rmoretti Status new => resolved
2013-10-11 13:45 rmoretti Resolution open => fixed
2013-10-11 13:45 rmoretti Assigned To => rmoretti

Copyright © 2000 - 2012 MantisBT Group
Powered by Mantis Bugtracker