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IDProjectCategoryView StatusDate SubmittedLast Update
0000214Rosetta[All Projects] Crashpublic2013-03-14 10:002013-03-18 14:27
Assigned ToAndrewLeaverFay 
PlatformOSOS Version
Product VersionTrunk 
Fixed in Version 
Summary0000214: SymPackRotamersMover dies with TaskOperation ReadResfile
DescriptionI am setting up symmetry and using the SymPackRotamersMover to design a membrane protein by only allowing certain amino acids to be designed in at each position as specified by the resfile. However, I found that this error happens with PIKAA as well as with NATAA, but not with NATRO or ALLAA. So it seems to be able to read the resfile, it just doesn't like being told which set of rotamers to choose from?

The example I provided below is with PIKAA and gives the same error I see with NATAA:

src/utility/vectorL.hh:363: utility::vectorL<<anonymous>, T, A>::reference utility::vectorL<<anonymous>, T, A>::operator[](utility::vectorL<<anonymous>, T, A>::index_type) [with long int L = 1l; T = int; A = std::allocator<int>; utility::vectorL<<anonymous>, T, A>::reference = int&; utility::vectorL<<anonymous>, T, A>::index_type = long unsigned int]: Assertion `static_cast< size_type >( i - l_ ) < super::size()' failed.
Got some signal... It is:6
Process was aborted!
Steps To ReproduceThe example below contains the all of the flags, xml, span, res etc files needed (and is for a resfile with PIKAA) so..
rosetta_scripts.default.linuxgccdebug @symm_fixbb.flags -parser:protocol symm_fixbb_rrf.xml
TagsNo tags attached.
Application(s) AffectedSymPackRotamersMover in RosettaScripts
Command Line Usedrosetta_scripts.default.linuxgccdebug @symm_fixbb.flags -parser:protocol symm_fixbb_rrf.xml
Developer Options
Fixed in SVN Version
Attached Filesgz file icon report_bug_sympacrot.tar.gz [^] (81,008 bytes) 2013-03-14 10:00

- Relationships

-  Notes
duranam (Attentive Developer)
2013-03-16 23:07

When backtracing, it seems it stops here:

in core::pack::interaction_graph::SymmOnTheFlyNode::set_rotamers (this=0x224f8320, rotamers=...)
    at src/core/pack/interaction_graph/

This line reads "state_offset_for_restype_group_[ ii ] = rotamers->get_residue_type_begin( ii ) - 1;

- Issue History
Date Modified Username Field Change
2013-03-14 10:00 duranam New Issue
2013-03-14 10:00 duranam File Added: report_bug_sympacrot.tar.gz
2013-03-16 23:07 duranam Note Added: 0000183
2013-03-18 14:27 smlewis Assigned To => AndrewLeaverFay
2013-03-18 14:27 smlewis Status new => assigned

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