0000214: SymPackRotamersMover dies with TaskOperation ReadResfile

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Date Submitted

Last Update

0000214

Rosetta

[All Projects] Crash

public

2013-03-14 10:00

2013-03-18 14:27

Reporter

duranam

Assigned To

AndrewLeaverFay

Priority

high

Severity

crash

Reproducibility

always

Status

assigned

Resolution

open

Platform

OS Version

Product Version

Trunk

Fixed in Version

Summary

0000214: SymPackRotamersMover dies with TaskOperation ReadResfile

Description

I am setting up symmetry and using the SymPackRotamersMover to design a membrane protein by only allowing certain amino acids to be designed in at each position as specified by the resfile. However, I found that this error happens with PIKAA as well as with NATAA, but not with NATRO or ALLAA. So it seems to be able to read the resfile, it just doesn't like being told which set of rotamers to choose from?

The example I provided below is with PIKAA and gives the same error I see with NATAA:

src/utility/vectorL.hh:363: utility::vectorL<<anonymous>, T, A>::reference utility::vectorL<<anonymous>, T, A>::operator[](utility::vectorL<<anonymous>, T, A>::index_type) [with long int L = 1l; T = int; A = std::allocator<int>; utility::vectorL<<anonymous>, T, A>::reference = int&; utility::vectorL<<anonymous>, T, A>::index_type = long unsigned int]: Assertion `static_cast< size_type >( i - l_ ) < super::size()' failed.
Got some signal... It is:6
Process was aborted!

Steps To Reproduce

The example below contains the all of the flags, xml, span, res etc files needed (and is for a resfile with PIKAA) so..
rosetta_scripts.default.linuxgccdebug @symm_fixbb.flags -parser:protocol symm_fixbb_rrf.xml

Tags

No tags attached.

Application(s) Affected

SymPackRotamersMover in RosettaScripts

Command Line Used

rosetta_scripts.default.linuxgccdebug @symm_fixbb.flags -parser:protocol symm_fixbb_rrf.xml

Developer Options

Fixed in SVN Version

Attached Files

report_bug_sympacrot.tar.gz [^] (81,008 bytes) 2013-03-14 10:00

Relationships

Notes
(0000183) duranam (Attentive Developer) 2013-03-16 23:07	When backtracing, it seems it stops here: in core::pack::interaction_graph::SymmOnTheFlyNode::set_rotamers (this=0x224f8320, rotamers=...) at src/core/pack/interaction_graph/SymmOnTheFlyInteractionGraph.cc:100 This line reads "state_offset_for_restype_group_[ ii ] = rotamers->get_residue_type_begin( ii ) - 1;

Issue History
Date Modified	Username	Field	Change
2013-03-14 10:00	duranam	New Issue
2013-03-14 10:00	duranam	File Added: report_bug_sympacrot.tar.gz
2013-03-16 23:07	duranam	Note Added: 0000183
2013-03-18 14:27	smlewis	Assigned To	=> AndrewLeaverFay
2013-03-18 14:27	smlewis	Status	new => assigned