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| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0000170 | Rosetta | [All Projects] Crash | public | 2013-01-20 20:17 | 2013-03-01 13:09 |
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| Reporter | momeara | |
| Assigned To | dimaio | |
| Priority | high | Severity | crash | Reproducibility | always |
| Status | resolved | Resolution | fixed | |
| Platform | All platforms | OS | Any | OS Version | Any |
| Product Version | | |
| Fixed in Version | | |
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| Summary | 0000170: Make CartesianBondEnergyTests::fail_test_create_parameters_for_restype() pass |
| Description | The function IdealParametersDatabase::parameters_for_restype(...) fails for some residue types. I've added a unit test (CartesianBondEnergyTests::fail_test_create_parameters_for_restype()) to show how this fails. To try the test, remove the 'fail_' from the beginning of the function name.
By my reading of the code the line CartesianBondEnergy.cc:1242 can assign rt1=0, which can lead to calling Residue::residue_connection( 0 ) on line CartesianBondEnergy:614.
I'm not sure why this happens for some residue types, or how it should be avoided. But this causes vector out of bounds errors and seg faults when using the cart_bonded energy with structures with these residue types.
For example this causes https:://svn.rosettacommons.org/source/trunk/rosetta.data/tests/scientific/tests/rotamer_recovery/inputs/1h4xFH.pdb to fail because it has a residue of type "SER_p:phosphorylated"
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| Tags | No tags attached. |
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| Application(s) Affected | cart_bonded energy function |
| Command Line Used | (see description) |
| Developer Options | Confirmed As Bug |
| Fixed in SVN Version | 53486 |
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| Attached Files | |
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