Mantis Bug Tracker

View Issue Details Jump to Notes ] Issue History ] Print ]
IDProjectCategoryView StatusDate SubmittedLast Update
0000017Rosetta[All Projects] Crashpublic2012-06-21 12:582012-06-21 17:37
Assigned Todelucasl 
PlatformX86OSLinuxOS VersionCentOS
Product VersionTrunk 
Fixed in VersionTrunk 
Summary0000017: Features reporters crashes with ResidueScoresFeatures when using membrane_highres
DescriptionWhen using the features reporters through rosetta scripts, if a membrane specific score function is used in conjunction with ResidueScoresFeatures, rosetta crashes.
Steps To Reproducerosetta_scripts.default.linuxgccdebug -in:file:s bound_ensemble_best_scoring.pdb -out:pdb -parser:protocol script.xml -database rosetta_database -membrane -overwrite -in:file:extra_res_fa ligand.params -membrane:normal_cycles 100 -membrane:normal_mag 15 -membrane:center_mag 2 -spanfile tms.span -in:file:fullatom
Additional Informationxml file is :



                <s weights=membrane_highres/>





                <SavePoseMover name=init_struct reference_name=init_struct/>

                <ReportToDB name=features_reporter db="features_IntegrationTest.db3" sample_source="Test the whole feature generation code stack.">

                        The following FeatureReporters are listed such that dependencies precede the FeatureReporters that depend on them.

                        <feature name=ResidueFeatures/>

                        <feature name=ResidueScoresFeatures scorefxn=s/>




                <Add mover_name=init_struct/>

                <Add mover_name=features_reporter/>


TagsNo tags attached.
Application(s) AffectedRosettaScripts
Command Line Usedrosetta_scripts.default.linuxgccdebug -in:file:s bound_ensemble_best_scoring.pdb -out:pdb -parser:protocol script.xml -database rosetta_database -membrane -overwrite -in:file:extra_res_fa ligand.params -membrane:normal_cycles 100 -membrane:normal_mag 15 -
Developer Options
Fixed in SVN Version49536
Attached Files

- Relationships

-  Notes
There are no notes attached to this issue.

- Issue History
Date Modified Username Field Change
2012-06-21 12:58 n.alexands New Issue
2012-06-21 13:49 delucasl Assigned To => delucasl
2012-06-21 13:49 delucasl Status new => assigned
2012-06-21 17:37 delucasl Fixed in SVN Version => 49536
2012-06-21 17:37 delucasl Product Version => Trunk
2012-06-21 17:37 delucasl Fixed in Version => Trunk
2012-06-21 17:37 delucasl Status assigned => resolved
2012-06-21 17:37 delucasl Resolution open => fixed

Copyright © 2000 - 2012 MantisBT Group
Powered by Mantis Bugtracker