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IDProjectCategoryView StatusDate SubmittedLast Update
0000145Rosetta[All Projects] Input Handlingpublic2012-10-27 15:272013-11-05 10:50
Assigned Toweitzner 
PlatformAll platformsOSAnyOS VersionAny
Product VersionTrunk 
Fixed in VersionTrunk 
Summary0000145: -loops:input_pdb is deprecated in loopmodel app after switch to JD2
DescriptionSince loopmodel has been switched to JD2, the input pdb is provided using the -s flag instead of the former -loops:input_pdb. However, when one still uses the old flag, there is no warning/error message that the flag is deprecated and that -s should be used instead.

Also the documentation should be updated to reflect this change in pdb input.
Steps To Reproducerun the loopmodel app, using the flag -loops:input_pdb to provide the input structure
TagsNo tags attached.
Application(s) Affectedloopmodel
Command Line Usedloopmodel.linuxgccrelease -database ROSETTA_DATABASE -loops:input_pdb INPUT_PDB -loops:loop_file LOOP_FILE -loops:remodel perturb_kic -loops:refine refine_kic
Developer Options
Fixed in SVN Versionbd4f744e3d3f8991df09cff9528de41e4dd04542
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- Issue History
Date Modified Username Field Change
2012-10-27 15:27 rpache New Issue
2012-10-31 11:36 weitzner Assigned To => weitzner
2012-10-31 11:36 weitzner Status new => assigned
2013-11-05 10:50 rmoretti Fixed in SVN Version => bd4f744e3d3f8991df09cff9528de41e4dd04542
2013-11-05 10:50 rmoretti Status assigned => resolved
2013-11-05 10:50 rmoretti Fixed in Version => Trunk
2013-11-05 10:50 rmoretti Resolution open => fixed

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