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IDProjectCategoryView StatusDate SubmittedLast Update
0000136Rosetta[All Projects] Incorrect Resultspublic2012-10-18 14:132012-10-18 14:13
Assigned Tosmlewis 
PlatformOSOS Version
Product Version 
Fixed in Version 
Summary0000136: InterfaceAnalyzer's pymol selections do not handle insertion codes
DescriptionIf you run InterfaceAnalyzer on a PDB containing insertion codes, the pymol-selection formatted output does not handle insertion codes, so you'll get weird and debatably incorrect results like this:

(notice 99 occurs thrice in the first chain)

select Fab2v_repacked_interface, /Fab2v_repacked//H/4+6+35+37+39+42+43+44+45+46+47+48+49+50+58+59+60+61+62+63+89+91+92+93+95+98+99+99+99+100+101+102+103+104+105+106+108+ + /Fab2v_repacked//L/1+32+33+34+35+36+38+40+41+42+43+44+45+46+48+49+50+55+56+85+87+89+90+91+92+93+94+95+96+97+98+99+100+101+
TagsNo tags attached.
Application(s) AffectedInterfaceAnalyzer (mover, but app too)
Command Line UsedInterfaceAnalyzer -s a_pdb_with_insertion_codes.pdb
Developer OptionsConfirmed As Bug
Fixed in SVN Version
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- Issue History
Date Modified Username Field Change
2012-10-18 14:13 smlewis New Issue
2012-10-18 14:13 smlewis Status new => assigned
2012-10-18 14:13 smlewis Assigned To => smlewis

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