MantisBT - Rosetta | |||||
| View Issue Details | |||||
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0000095 | Rosetta | [All Projects] Crash | public | 2012-09-05 09:41 | 2012-09-05 10:50 |
| Reporter | smlewis | ||||
| Assigned To | smlewis | ||||
| Priority | normal | Severity | major | Reproducibility | always |
| Status | resolved | Resolution | fixed | ||
| Platform | OS | OS Version | |||
| Product Version | |||||
| Fixed in Version | Trunk | ||||
| Application(s) Affected | AbinitioRelax | ||||
| Command Line Used | reported at top of forum thread | ||||
| Developer Options | Confirmed As Bug | ||||
| Fixed in SVN Version | 50962 | ||||
| Summary | 0000095: AbinitioRelax crashes if given fasta file for short peptide (6 residues confirmed to fail) | ||||
| Description | http://www.rosettacommons.org/content/abinitiorelax-very-small-peptides [^] Briefly, if you try to run abrelax on a short peptide (I am guessing shorter than 9, but 6 is confirmed to fail), abrelax crashes. | ||||
| Steps To Reproduce | |||||
| Additional Information | Error at standard verbosity: *************************************** core.init: Mini-Rosetta version unknown from unknown core.init: command: ./AbinitioRelax.default.linuxgccrelease @AbFlags core.init: 'RNG device' seed mode, using '/dev/urandom', seed=-1128871718 seed_offset=0 real_seed=-1128871718 core.init.random: RandomGenerator:init: Normal mode, seed=-1128871718 RG_type=mt19937 protocols.abinitio.AbrelaxApplication: read fasta sequence: 6 residues LRPWYR protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... core.chemical.ResidueTypeSet: Finished initializing centroid residue type set. Created 1980 residue types ERROR: seqpos <= size() ERROR:: Exit from: src/core/conformation/Conformation.hh line: 289 ********************************************** Error at super-verbosity (just the end bit): core.chemical.ResidueTypeSet: Finished initializing centroid residue type set. Created 1980 residue types core.pose: one_letter: LRPWYR core.pose: seq_in: LRPWYR core.pose: residue_types_from_sequence(): seqpos: 1 aa L LEU core.pose: residue_types_from_sequence(): seqpos: 2 aa R ARG core.pose: residue_types_from_sequence(): seqpos: 3 aa P PRO core.pose: residue_types_from_sequence(): seqpos: 4 aa W TRP core.pose: residue_types_from_sequence(): seqpos: 5 aa Y TYR core.pose: residue_types_from_sequence(): seqpos: 6 aa R ARG core.pose: make_pose_from_sequence(): seqpos: 1 LEU core.pose: make_pose_from_sequence(): seqpos: 2 ARG core.pose: make_pose_from_sequence(): seqpos: 3 PRO core.pose: make_pose_from_sequence(): seqpos: 4 TRP core.pose: make_pose_from_sequence(): seqpos: 5 TYR core.pose: make_pose_from_sequence(): seqpos: 6 ARG core.pose: sequence in pose: LRPWYR core.pose: annotated seq: L[LEU_p:NtermProteinFull]RPWYR[ARG_p:CtermProteinFull] ERROR: seqpos <= size() ERROR:: Exit from: src/core/conformation/Conformation.hh line: 289 | ||||
| Tags | No tags attached. | ||||
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| Attached Files | |||||
| Issue History | |||||
| Date Modified | Username | Field | Change | ||
| 2012-09-05 09:41 | smlewis | New Issue | |||
| 2012-09-05 10:50 | smlewis | Fixed in SVN Version | => 50962 | ||
| 2012-09-05 10:50 | smlewis | Note Added: 0000092 | |||
| 2012-09-05 10:50 | smlewis | Status | new => resolved | ||
| 2012-09-05 10:50 | smlewis | Fixed in Version | => Trunk | ||
| 2012-09-05 10:50 | smlewis | Resolution | open => fixed | ||
| 2012-09-05 10:50 | smlewis | Assigned To | => smlewis | ||
| Notes | |||||
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