MantisBT - Rosetta | |||||
| View Issue Details | |||||
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0000089 | Rosetta | [All Projects] Input Handling | public | 2012-08-27 15:52 | 2012-08-29 22:34 |
| Reporter | delucasl | ||||
| Assigned To | delucasl | ||||
| Priority | low | Severity | minor | Reproducibility | always |
| Status | resolved | Resolution | fixed | ||
| Platform | All platforms | OS | Any | OS Version | Any |
| Product Version | All | ||||
| Fixed in Version | |||||
| Application(s) Affected | rosetta_scripts | ||||
| Command Line Used | rosetta_scripts.default.linuxgccrelease @rescore.options -in:file:l list.relax_pdbs_rescore.txt -nstruct 1 -in:file:extra_res_fa 3rzeA.params -parser:protocol rescore.xml -database /sb/meiler/rosetta/rosetta-3.4/rosetta_database | ||||
| Developer Options | Confirmed As Bug | ||||
| Fixed in SVN Version | 50879 | ||||
| Summary | 0000089: Incorrect chain in InterfaceScoreCalculator results in incomprehensible error message | ||||
| Description | The Mover was instantiated using the options: <InterfaceScoreCalculator chains=X name=add_scores native=/home/dongen/for/philine/gpcr_benchmark/3rzeA_ligand.pdb scorefxn=hard_rep/> but in the native protein, Chain X does not exist. The result is the error ERROR: seqpos <= size() ERROR:: Exit from: src/core/conformation/Conformation.hh line: 289 A debug log is found below ----------------------------- protocols.rosetta_scripts.ParsedProtocol: =======================BEGIN MOVER InterfaceScoreCalculator======================= { rosetta_scripts.mysql.linuxgccdebug: src/protocols/ligand_docking/InterfaceScoreCalculator.cc:193: void protocols::ligand_docking::InterfaceScoreCalculator::append_ligand_docking_scores(const core::pose::Pose&, protocols::jd2::JobOP) const: Assertion `core::pose::has_chain(chain, *native_)' failed. Program received signal SIGABRT, Aborted. 0x0000003dbce328a5 in raise () from /lib64/libc.so.6 | ||||
| Steps To Reproduce | |||||
| Additional Information | |||||
| Tags | No tags attached. | ||||
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| Attached Files | |||||
| Issue History | |||||
| Date Modified | Username | Field | Change | ||
| 2012-08-27 15:52 | delucasl | New Issue | |||
| 2012-08-27 15:52 | delucasl | Status | new => assigned | ||
| 2012-08-27 15:52 | delucasl | Assigned To | => delucasl | ||
| 2012-08-29 22:34 | delucasl | Fixed in SVN Version | => 50879 | ||
| 2012-08-29 22:34 | delucasl | Status | assigned => resolved | ||
| 2012-08-29 22:34 | delucasl | Resolution | open => fixed | ||
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