MantisBT - Rosetta
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0000007Rosetta[All Projects] Crashpublic2012-06-19 11:212015-08-18 03:07
smlewis 
 
lowminoralways
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rosetta -l pdblist @options
0000007: passing PDBs to -l causes unexpected behavior
If you pass a PDB to -l instead of to -s, Rosetta accumulates gobs of memory (10GB+) before your sysadmin gets mad and kills the job. It would be useful to track down why it is doing this...
instead of "ls *pdb > pdblist" and "rosetta -l pdblist", accidentally do "cat *pdb > pdblist" and "rosetta -l pdblist" and watch in horror as rosetta explodes in memory usage
l, memory overload
Issue History
2012-06-19 11:21delucaslNew Issue
2012-06-19 11:21delucaslStatusnew => assigned
2012-06-19 11:21delucaslAssigned To => smlewis
2012-06-19 11:21delucaslTag Attached: l
2012-06-19 11:21delucaslTag Attached: memory overload
2012-06-19 11:31smlewisReporterdelucasl => smlewis
2012-06-19 11:31smlewisAssigned Tosmlewis =>
2012-06-19 11:31smlewisStatusassigned => confirmed
2015-08-18 03:07jadolfbrNote Added: 0000359

Notes
(0000359)
jadolfbr   
2015-08-18 03:07   
This may be a duplicate of bug 190:

https://carbon.structbio.vanderbilt.edu/mantisbt/view.php?id=190 [^]