MantisBT - Rosetta | |||||
| View Issue Details | |||||
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0000063 | Rosetta | [All Projects] Crash | public | 2012-08-08 09:15 | 2012-08-08 10:09 |
| Reporter | smlewis | ||||
| Assigned To | smlewis | ||||
| Priority | normal | Severity | major | Reproducibility | always |
| Status | resolved | Resolution | fixed | ||
| Platform | OS | OS Version | |||
| Product Version | Trunk | ||||
| Fixed in Version | |||||
| Application(s) Affected | symmetric packing | ||||
| Command Line Used | fixbb.linuxgccrelease @flags_fixbb_symm -s my_monomer -symmetry:symmetry_definition my_symmdef -out:file:silent mysilent.out -out:file:scorefile myscore.sc -linmem_ig 10 | ||||
| Developer Options | |||||
| Fixed in SVN Version | 50279 | ||||
| Summary | 0000063: LinearMemoryInteractionGraph causes uninformative crashes in ScoreFunction::operator() when used with symmetry | ||||
| Description | http://www.rosettacommons.org/content/fix-back-bone-design-fixbb#comment-4933 [^] Apparently, -linmem_ig breaks symmetric packing. PDInteractionGraph works, LinearMemoryInteractionGraph does not. I think the bug is that OnTheFlyInteractionGraph (parent of LinearMemoryInteractionGraph) clones an incoming scorefunction incorrectly: OnTheFlyInteractionGraph.cc:465 score_function_ = new scoring::ScoreFunction( sfxn ); instead of, say, score_function_ = sfxn.clone(); which would preserve SymmetricScoreFunction's subclassedness. | ||||
| Steps To Reproduce | |||||
| Additional Information | I am testing if my suggested code change passes the tests, and have requested that the reporting user test against his use case. | ||||
| Tags | No tags attached. | ||||
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| Attached Files | |||||
| Issue History | |||||
| Date Modified | Username | Field | Change | ||
| 2012-08-08 09:15 | smlewis | New Issue | |||
| 2012-08-08 09:15 | smlewis | Status | new => assigned | ||
| 2012-08-08 09:15 | smlewis | Assigned To | => smlewis | ||
| 2012-08-08 10:08 | smlewis | Fixed in SVN Version | => 50279 | ||
| 2012-08-08 10:08 | smlewis | Note Added: 0000051 | |||
| 2012-08-08 10:08 | smlewis | Status | assigned => resolved | ||
| 2012-08-08 10:08 | smlewis | Resolution | open => fixed | ||
| 2012-08-08 10:09 | smlewis | Note Added: 0000052 | |||
| 2012-08-08 10:09 | smlewis | Summary | LinearMemoryInteractionGraph is not compatible with symmetry => LinearMemoryInteractionGraph causes uninformative crashes in ScoreFunction::operator() when used with symmetry | ||
| Notes | |||||
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