MantisBT - Rosetta
View Issue Details
0000359Rosetta[All Projects] Incorrect Resultspublic2015-06-09 16:392015-08-18 00:53
jadolfbr 
jadolfbr 
lowminoralways
resolvedfixed 
All platformsAnyAny
Trunk 
Trunk 
RS Features Output/ All output using databases
rosetta_scripts.linuxclangrelease -check_cdr_chainbreaks false -check_cdr_pep_bond_geom false -database $ROSETTA3/database -parser:protocol $1 @ features/features.flag -l $lambda $kappa -in:path $dir -out:path:all $out_dir -parser:script_vars name=$name s
Feature Request
58057
0000359: out:path:all does not work for features/database output
out:path:all works for score files and PDBs, but not features databases. The new databases always go to the current working directory.
No tags attached.
Issue History
2015-06-09 16:39jadolfbrNew Issue
2015-08-18 00:53jadolfbrFixed in SVN Version => 58057
2015-08-18 00:53jadolfbrNote Added: 0000354
2015-08-18 00:53jadolfbrStatusnew => resolved
2015-08-18 00:53jadolfbrFixed in Version => Trunk
2015-08-18 00:53jadolfbrResolutionopen => fixed
2015-08-18 00:53jadolfbrAssigned To => jadolfbr

Notes
(0000354)
jadolfbr   
2015-08-18 00:53   
Merge pull request #688 from RosettaCommons/jadolfbr/db_with_path
https://github.com/RosettaCommons/main/commit/63cc95ac7277ad06437162749bfa97a6a5b0b3e0?w=1 [^]

Allow pathing to database output

This merge allows -out:path:all to be used by -out:use_database and the FeaturesReporter framework. Adds another option -out:path:db to be used specifically for databases.

Tested using pdb output to db via score_jd2 and a feature reporter script.
Fixes bug/feature request 359: https://carbon.structbio.vanderbilt.edu/mantisbt/view.php?id=359 [^]