MantisBT - Rosetta | |||||
View Issue Details | |||||
ID | Project | Category | View Status | Date Submitted | Last Update |
0000356 | Rosetta | [All Projects] Crash | public | 2014-11-04 11:12 | 2014-11-04 11:12 |
Reporter | rmoretti | ||||
Assigned To | |||||
Priority | normal | Severity | minor | Reproducibility | always |
Status | new | Resolution | open | ||
Platform | OS | OS Version | |||
Product Version | |||||
Fixed in Version | |||||
Application(s) Affected | minirosetta | ||||
Command Line Used | minirosetta.linuxgccrelease @options | ||||
Developer Options | |||||
Fixed in SVN Version | |||||
Summary | 0000356: Minirosetta threading protocol segfaults on alignments with no gap. | ||||
Description | If you use the threading protocol on the minirosetta application with an alignment which doesn't have any gaps, Rosetta will segfault. The error occurs in protocols::loops::fold_tree_from_loops(), where root() is taken from an empty FoldTree. The reason for the empty FoldTree is that the loops passed in is empty, because in LoopRelaxMover::apply(), pick_loops_chainbreak() returns no loops. | ||||
Steps To Reproduce | |||||
Additional Information | One fix may be to turn off loop refinement as well as loop remodeling in the test for an empty loop return from pick_loops_chainbreak(). fold_tree_from_loops() should probably be robust to an empty loops - or at the very least shouldn't segfault. See https://www.rosettacommons.org/comment/7926 [^] | ||||
Tags | No tags attached. | ||||
Relationships | |||||
Attached Files | |||||
Issue History | |||||
Date Modified | Username | Field | Change | ||
2014-11-04 11:12 | rmoretti | New Issue |
There are no notes attached to this issue. |