MantisBT - Rosetta
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0000346Rosetta[All Projects] Crashpublic2014-07-07 14:112014-07-07 14:12
rmoretti 
 
normalminoralways
newopen 
 
 
InterfaceAnalyzer
InterfaceAnalyzer.linuxgccrelease -fixedchains A B -compute_packstat -no_nstruct_label -out:file:score_only interface_analysis.sc -s *.pdb.gz -extra_res_fa XTRA101.params
0000346: Using IntefaceAnalyzer with a ligand and -fixedchains results in segfault
In a two-protein, one small molecule ligand protein, using the -fixedchains option (either with "-fixedchains A B" or "-fixedchains X") results in a Segfault. This is likely due to the single residue peptide edge made in the foldtree:

apps.public.analysis.InterfaceAnalyzer: Fixed chains are: A, B, these will be moved together.
core.kinematics.FoldTree: FoldTree::reorder( 287 ) failed, new/old edge_list_ size mismatch
core.kinematics.FoldTree: 5 4
core.kinematics.FoldTree: FOLD_TREE EDGE 1 234 -1 EDGE 1 287 1 EDGE 235 286 -1 EDGE 235 234 2 EDGE 287 287 -1
Segmentation fault
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gz FXAX_gtc000398_XTRA101_0001.pdb.gz (91,206) 2014-07-07 14:11
https://carbon.structbio.vanderbilt.edu/mantisbt/file_download.php?file_id=45&type=bug
? XTRA101.params (6,513) 2014-07-07 14:12
https://carbon.structbio.vanderbilt.edu/mantisbt/file_download.php?file_id=46&type=bug
Issue History
2014-07-07 14:11rmorettiNew Issue
2014-07-07 14:11rmorettiFile Added: FXAX_gtc000398_XTRA101_0001.pdb.gz
2014-07-07 14:12rmorettiFile Added: XTRA101.params

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