MantisBT - Rosetta
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0000342Rosetta[All Projects] Input Handlingpublic2014-06-25 13:252014-06-25 13:25
jadolfbr 
 
lowminoralways
newopen 
All platformsAnyAny
 
 
compare_sample_sources.R
./compare_sample_sources.R --config local_json.json
0000342: Features scripts hardcode ref as the first sample_source
Although you can specify reference = true or false in the json for controlling which db is the reference, in the R features framework this is hardcoded as the first database of sample_sources.
Use a script that requires a reference database and pass the reference database as not-the-first on the list
See query_sample_sources_as_ref function in methods.R
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2014-06-25 13:25jadolfbrNew Issue

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