MantisBT - Rosetta
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0000340Rosetta[All Projects] Input Handlingpublic2014-06-23 12:112014-06-23 12:11
rmoretti 
 
normalminoralways
newopen 
 
 
any
many
0000340: Printing of commandline removes quotes
If you provide a quoted commandline variable to Rosetta (for example, you use the property of -s that will concatenated PDB files), when it's printed in the log file it will become unquoted.

E.g. the command:

score_jd2.linuxgccrelease -s "protein.pdb ligand.pdb"

Will be printed as

core.init: command: score_jd2.linuxgccrelease -s protein.pdb ligand.pdb

in the log file. The commands with and without quotes have very different behaviors.
When printing, we should probably check for things like spaces, and if present add quotes to make things copy-pastable.
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2014-06-23 12:11rmorettiNew Issue

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