MantisBT - Rosetta | ||||||||||
| View Issue Details | ||||||||||
| ID | Project | Category | View Status | Date Submitted | Last Update | |||||
| 0000320 | Rosetta | [All Projects] Bad Coding | public | 2014-01-21 14:03 | 2014-01-21 14:20 | |||||
| Reporter | Labonte | |||||||||
| Assigned To | Labonte | |||||||||
| Priority | normal | Severity | minor | Reproducibility | always | |||||
| Status | resolved | Resolution | fixed | |||||||
| Platform | OS | OS Version | ||||||||
| Product Version | Trunk | |||||||||
| Fixed in Version | Trunk | |||||||||
| Application(s) Affected | unknown | |||||||||
| Command Line Used | -out:levels core.chemical.PatchOperations.hh:400 | |||||||||
| Developer Options | ||||||||||
| Fixed in SVN Version | TBD | |||||||||
| Summary | 0000320: Patch system fails to patch SER properly in 158 cases | |||||||||
| Description | When the Tracer volume is turned up for core.chemical.PatchOperations.hh, it becomes clear that there are issues patching the SER ResidueType with the phosphorylated patch due to a missing HG atom. | |||||||||
| Steps To Reproduce | Use the -out:levels core.chemical.PatchOperations.hh:400 flag. | |||||||||
| Additional Information | Tracer Output: core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:NtermProteinFull_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:protein_cutpoint_upper_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_lower_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:protein_cutpoint_lower_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:ProteinVirtBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:NtermProteinFull_p:ProteinVirtBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:ProteinVirtBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:protein_cutpoint_upper_p:ProteinVirtBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_lower_p:ProteinVirtBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:ProteinVirtBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:protein_cutpoint_lower_p:ProteinVirtBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:NtermProteinFull_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:protein_cutpoint_upper_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_lower_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:protein_cutpoint_lower_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:NtermProteinFull_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:protein_cutpoint_upper_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_lower_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:protein_cutpoint_lower_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:VirtualNterm_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:NtermProteinFull_p:VirtualNterm_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:VirtualNterm_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:VirtualNterm_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:NtermProteinFull_p:ProteinVirtBB_p:VirtualNterm_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:ProteinVirtBB_p:VirtualNterm_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinShoveBB_p:VirtualNterm_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:NtermProteinFull_p:ProteinShoveBB_p:VirtualNterm_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:ProteinShoveBB_p:VirtualNterm_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:ProteinShoveBB_p:VirtualNterm_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermProteinFull_p:NtermProteinFull_p:ProteinVirtBB_p:ProteinShoveBB_p:VirtualNterm_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:ProteinVirtBB_p:ProteinShoveBB_p:VirtualNterm_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:Virtual_Protein_Residue_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:Virtual_Protein_Residue_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_lower_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:protein_cutpoint_lower_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:ProteinVirtBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_lower_p:ProteinVirtBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:ProteinVirtBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:protein_cutpoint_lower_p:ProteinVirtBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_lower_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:protein_cutpoint_lower_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:ProteinVirtBB_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_lower_p:ProteinVirtBB_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:ProteinVirtBB_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:protein_cutpoint_upper_p:protein_cutpoint_lower_p:ProteinVirtBB_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:VirtualNterm_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:VirtualNterm_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:VirtualNterm_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:ProteinVirtBB_p:VirtualNterm_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinShoveBB_p:VirtualNterm_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:ProteinShoveBB_p:VirtualNterm_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:ProteinShoveBB_p:VirtualNterm_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:protein_cutpoint_lower_p:ProteinVirtBB_p:ProteinShoveBB_p:VirtualNterm_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:Virtual_Protein_Residue_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:Virtual_Protein_Residue_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermConnect_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:CtermConnect_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated_p:N_acetylated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinShoveBB_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:VirtualNterm_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:VirtualNterm_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinShoveBB_p:VirtualNterm_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:ProteinShoveBB_p:VirtualNterm_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:Virtual_Protein_Residue_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:Virtual_Protein_Residue_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:VirtualNterm_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:VirtualNterm_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinShoveBB_p:VirtualNterm_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:NtermProteinFull_p:ProteinVirtBB_p:ProteinShoveBB_p:VirtualNterm_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:Virtual_Protein_Residue_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:Virtual_Protein_Residue_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:CtermConnect_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:CtermConnect_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:CtermConnect_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:ProteinVirtBB_p:ProteinShoveBB_p:Virtual_Protein_Residue_p:CtermConnect_p:phosphorylated_p:N_acetylated_p:C_methylamidated is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:phosphorylated_p:MethylatedCtermProteinFull is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:Virtual_Protein_Residue_p:phosphorylated_p:MethylatedCtermProteinFull is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:phosphorylated_p:AcetylatedNtermProteinFull is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:Virtual_Protein_Residue_p:phosphorylated_p:AcetylatedNtermProteinFull is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:phosphorylated_p:MethylatedCtermProteinFull_p:AcetylatedNtermProteinFull is missing atom: HG core.chemical.PatchOperations.hh: SetAtomType::apply failed: SER_p:Virtual_Protein_Residue_p:phosphorylated_p:MethylatedCtermProteinFull_p:AcetylatedNtermProteinFull is missing atom: HG | |||||||||
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| Issue History | ||||||||||
| Date Modified | Username | Field | Change | |||||||
| 2014-01-21 14:03 | Labonte | New Issue | ||||||||
| 2014-01-21 14:04 | Labonte | Relationship added | related to 0000309 | |||||||
| 2014-01-21 14:18 | Labonte | Assigned To | => Labonte | |||||||
| 2014-01-21 14:18 | Labonte | Status | new => assigned | |||||||
| 2014-01-21 14:20 | Labonte | Fixed in SVN Version | => TBD | |||||||
| 2014-01-21 14:20 | Labonte | Note Added: 0000326 | ||||||||
| 2014-01-21 14:20 | Labonte | Status | assigned => resolved | |||||||
| 2014-01-21 14:20 | Labonte | Fixed in Version | => Trunk | |||||||
| 2014-01-21 14:20 | Labonte | Resolution | open => fixed | |||||||
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