MantisBT - Rosetta | |||||
| View Issue Details | |||||
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0000312 | Rosetta | [All Projects] Crash | public | 2013-11-19 10:17 | 2013-11-19 10:17 |
| Reporter | rmoretti | ||||
| Assigned To | |||||
| Priority | normal | Severity | minor | Reproducibility | always |
| Status | new | Resolution | open | ||
| Platform | OS | OS Version | |||
| Product Version | |||||
| Fixed in Version | |||||
| Application(s) Affected | CstfileToTheozymePDB | ||||
| Command Line Used | ../../../main/source/bin/CstfileToTheozymePDB.linuxgccdebug -extra_res_fa rosetta_inputs/1n1.params -match:geometric_constraint_file rosetta_inputs/mocktim.cst | ||||
| Developer Options | Confirmed As Bug | ||||
| Fixed in SVN Version | |||||
| Summary | 0000312: CstfileToTheozymePDB results in segmentation fault for secondary constraints. | ||||
| Description | If you pass a constraint file with a secondary constraint with less than six degrees of freedom, CstfileToTheozymePDB can segfault. Although CstfileToTheozymePDB needs to have all six degrees of freedom specified, it should give a useful error message to that effect and gracefully exit, rather than segfaulting. | ||||
| Steps To Reproduce | Go to Rosetta/demos/public/enzyme_design Run ../../../main/source/bin/CstfileToTheozymePDB.linuxgccdebug -extra_res_fa rosetta_inputs/1n1.params -match:geometric_constraint_file rosetta_inputs/mocktim.cst Note that this is the full mocktim.cst constraint file, rather than the cut down mocktim_first_2interactions_example.cst constraint file that the demo normally passes to CstfileToTheozymePDB | ||||
| Additional Information | Thanks to Guanlin Li from the November 2013 Rosetta Workshop at Vanderbilt for finding this bug. | ||||
| Tags | No tags attached. | ||||
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| Attached Files | |||||
| Issue History | |||||
| Date Modified | Username | Field | Change | ||
| 2013-11-19 10:17 | rmoretti | New Issue | |||
| There are no notes attached to this issue. |