MantisBT - Rosetta
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0000296Rosetta[All Projects] Incorrect Resultspublic2013-08-08 15:212014-01-09 17:55
jgray 
jadolfbr 
normalminoralways
resolvedopen 
All platformsAnyAny
Trunk 
Trunk 
antibody
test/run.py -1 AntibodyInfoTest
Confirmed As Bug
56176
0000296: kink_cation_residue gives incorrect result if AbInfo is using ModifiedAHO numbering scheme
cdr_numbering_ was meant to be a set of landmark positions from which other positions can be abstracted. but it is also being used to define different stretches of loop, which makes it non-absolute.

probably need a cdr_landmarks_, and some separation of NumberingScheme idea and LoopDefinition idea
uncomment line in AntibodyInfoTest.cxxtest.cc
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Issue History
2013-08-08 15:21jgrayNew Issue
2013-08-08 15:21jgrayStatusnew => assigned
2013-08-08 15:21jgrayAssigned To => jadolfbr
2013-12-04 14:52jadolfbrNote Added: 0000323
2014-01-09 17:55jadolfbrFixed in SVN Version => 56176
2014-01-09 17:55jadolfbrNote Added: 0000325
2014-01-09 17:55jadolfbrStatusassigned => resolved
2014-01-09 17:55jadolfbrFixed in Version => Trunk

Notes
(0000323)
jadolfbr   
2013-12-04 14:52   
Fixed in jadolfbr/schemes. Awaiting a strange bug unrelated to changed code to push to trunk.
(0000325)
jadolfbr   
2014-01-09 17:55   
AntibodyInfo now requires a numbering scheme and a definition. Metrics can now specify which definition they are referring to, and conversion happens when using a different definition. Apps now require a numbering scheme and definition on the cmd line. http://rosettatests.graylab.jhu.edu/rev?id=56176 [^]