MantisBT - Rosetta | |||||
| View Issue Details | |||||
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0000284 | Rosetta | [All Projects] Input Handling | public | 2013-06-19 10:12 | 2013-06-19 10:12 |
| Reporter | ralford | ||||
| Assigned To | |||||
| Priority | normal | Severity | minor | Reproducibility | always |
| Status | new | Resolution | open | ||
| Platform | All platforms | OS | Any | OS Version | Any |
| Product Version | Trunk | ||||
| Fixed in Version | |||||
| Application(s) Affected | dockingprotocol | ||||
| Command Line Used | See steps to reproduce*** | ||||
| Developer Options | Confirmed As Bug | ||||
| Fixed in SVN Version | |||||
| Summary | 0000284: Docking Protocol Segfaults when Passed Symmetry Flags | ||||
| Description | in the user documentation, it is defined that the Docking protocol does not support symmetry (symmetry definition files, etc) and to use the symmetric docking protocol instead. However, if in error, symmetry options are passed to Docking, Docking will throw an error and segfault. Docking should just throw an error and not crash in that way. | ||||
| Steps To Reproduce | PDB: 1afo.pdb (Glycophorin A) Run Command: docking_protocol.macosgccrelease -database /path/to/db @flags Contents of Flags File: # Input Option Group -s 1afoA_relaxed.pdb -run:constant_seed -out:nstruct 1 # # Docking Options -docking:partners A_B -dock_pert 3 8 -run:max_retry_job 10 -docking:sc_min -packing:ex1 -packing:ex2aro # # Symmetry Options -symmetry:symmetry_definition ../1afo.c2.symm -symmetry:initialize_rigid_body_dofs -symmetry:symmetric_rmsd # # Add scoring options -evaluation:gdtmm -evaluation:rmsd -overwrite | ||||
| Additional Information | |||||
| Tags | No tags attached. | ||||
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| Issue History | |||||
| Date Modified | Username | Field | Change | ||
| 2013-06-19 10:12 | ralford | New Issue | |||
| There are no notes attached to this issue. |