MantisBT - Rosetta | |||||
| View Issue Details | |||||
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0000028 | Rosetta | [All Projects] Bad Coding | public | 2012-06-26 08:38 | 2012-06-27 17:18 |
| Reporter | smlewis | ||||
| Assigned To | momeara | ||||
| Priority | low | Severity | minor | Reproducibility | always |
| Status | resolved | Resolution | fixed | ||
| Platform | All platforms | OS | Any | OS Version | Any |
| Product Version | |||||
| Fixed in Version | |||||
| Application(s) Affected | fixbb integration test | ||||
| Command Line Used | integration.py fixbb | ||||
| Developer Options | |||||
| Fixed in SVN Version | 49635 | ||||
| Summary | 0000028: 1L2Y produces warnings in fixbb integration test | ||||
| Description | 1L2Y produces warnings in the fixbb integration test: core.io.pdb.file_data: [ WARNING ] discarding 7 atoms at position 1 in file 1l2y.pdb. Best match rsd_type: ASN_p:NtermProteinFull core.io.pdb.file_data: [ WARNING ] discarding 8 atoms at position 2 in file 1l2y.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 3 in file 1l2y.pdb. Best match rsd_type: TYR core.io.pdb.file_data: [ WARNING ] discarding 8 atoms at position 4 in file 1l2y.pdb. Best match rsd_type: ILE core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 5 in file 1l2y.pdb. Best match rsd_type: GLN core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 6 in file 1l2y.pdb. Best match rsd_type: TRP core.io.pdb.file_data: [ WARNING ] discarding 8 atoms at position 7 in file 1l2y.pdb. Best match rsd_type: LEU core.io.pdb.file_data: [ WARNING ] discarding 11 atoms at position 8 in file 1l2y.pdb. Best match rsd_type: LYS core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 9 in file 1l2y.pdb. Best match rsd_type: ASP core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 10 in file 1l2y.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 11 in file 1l2y.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 12 in file 1l2y.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 13 in file 1l2y.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 14 in file 1l2y.pdb. Best match rsd_type: SER core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 15 in file 1l2y.pdb. Best match rsd_type: GLY core.io.pdb.file_data: [ WARNING ] discarding 10 atoms at position 16 in file 1l2y.pdb. Best match rsd_type: ARG core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 17 in file 1l2y.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 18 in file 1l2y.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 6 atoms at position 19 in file 1l2y.pdb. Best match rsd_type: PRO core.io.pdb.file_data: [ WARNING ] discarding 2 atoms at position 20 in file 1l2y.pdb. Best match rsd_type: SER_p:CtermProteinFull | ||||
| Steps To Reproduce | integration.py fixbb | ||||
| Additional Information | Suggested fixes: replace 1l2y with a rosetta-output PDB, or grep -v the hydrogens | ||||
| Tags | No tags attached. | ||||
| Relationships | |||||
| Attached Files | |||||
| Issue History | |||||
| Date Modified | Username | Field | Change | ||
| 2012-06-26 08:38 | smlewis | New Issue | |||
| 2012-06-27 11:56 | momeara | Fixed in SVN Version | => 49635 | ||
| 2012-06-27 11:56 | momeara | Note Added: 0000017 | |||
| 2012-06-27 11:56 | momeara | Status | new => closed | ||
| 2012-06-27 11:56 | momeara | Assigned To | => momeara | ||
| 2012-06-27 11:56 | momeara | Resolution | open => fixed | ||
| 2012-06-27 17:18 | delucasl | Status | closed => resolved | ||
| Notes | |||||
|
|
|||||
|
|
||||