0000262: only first model read from gzipped silent files

MantisBT - Rosetta
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ID	Project	Category	View Status	Date Submitted	Last Update
0000262	Rosetta	[All Projects] Input Handling	public	2013-05-01 11:09	2013-05-01 11:09

Reporter	nannemdp
Assigned To	smlewis
Priority	normal	Severity	minor	Reproducibility	always
Status	assigned	Resolution	open
Platform	X86	OS	Linux	OS Version	CentOS
Product Version	Trunk
Fixed in Version
Application(s) Affected	format_converter, score_jd2, probably all other jd2 apps
Command Line Used	rosetta_source/bin/format_converter.default.linuxgccrelease -database rosetta_database -no_optH -in:file:silent SILENT.silent.gz -out:pdb -out:no_nstruct_label
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Fixed in SVN Version

Summary	0000262: only first model read from gzipped silent files
Description	The job distributor is only reading the first model of gzipped silent files, using in:file:silent SILENT.silent.gz. Unzipping the silent file and reading again will read all the models in the silent file. This was observed with both the format_converter and score_jd2.
Steps To Reproduce	Create a multi-model gzipped silent file. Unsuccessfully extract models with format_converter: rosetta_source/bin/format_converter.default.linuxgccrelease -database rosetta_database -no_optH -in:file:silent SILENT.silent.gz -out:pdb -out:no_nstruct_label Unzip silent file Successfully extract models with format_converter: rosetta_source/bin/format_converter.default.linuxgccrelease -database rosetta_database -no_optH -in:file:silent SILENT.silent -out:pdb -out:no_nstruct_label
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Issue History
Date Modified	Username	Field	Change
2013-05-01 11:09	nannemdp	New Issue
2013-05-01 11:09	nannemdp	Status	new => assigned
2013-05-01 11:09	nannemdp	Assigned To	=> smlewis

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