MantisBT - Rosetta | ||||||||||
View Issue Details | ||||||||||
ID | Project | Category | View Status | Date Submitted | Last Update | |||||
0000202 | Rosetta | [All Projects] Bad Coding | public | 2013-03-12 16:56 | 2013-03-13 11:07 | |||||
Reporter | smlewis | |||||||||
Assigned To | ||||||||||
Priority | low | Severity | minor | Reproducibility | always | |||||
Status | new | Resolution | open | |||||||
Platform | OS | OS Version | ||||||||
Product Version | Trunk | |||||||||
Fixed in Version | ||||||||||
Application(s) Affected | mm scoring, fa_standard_icoor | |||||||||
Command Line Used | N/A | |||||||||
Developer Options | ||||||||||
Fixed in SVN Version | ||||||||||
Summary | 0000202: in fa_standard_05.2009_icoor, many atoms have X instead of VIRT for mm atom type | |||||||||
Description | 14:53:46 ~/rosetta/rosetta_database/chemical/residue_type_sets> diff fa_standard/residue_types/metal_ions/MG.params fa_standard_05.2009_icoor/residue_types/metal_ions/MG.params 7,9c7,9 < ATOM MG Mg2p VIRT 2.00 < ATOM V1 VIRT VIRT 0.00 < ATOM V2 VIRT VIRT 0.00 --- > ATOM MG Mg2p X 2.00 > ATOM V1 VIRT X 0.00 > ATOM V2 VIRT X 0.00 VIRT is the appropriate mm atom type for virtual atoms (and Mg, unless we get magnesium parameters) - X triggers crashes, but VIRT triggers "do not score this atom for mm purposes" This is likely true in many places but I only checked MG.params | |||||||||
Steps To Reproduce | ||||||||||
Additional Information | ||||||||||
Tags | No tags attached. | |||||||||
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Issue History | ||||||||||
Date Modified | Username | Field | Change | |||||||
2013-03-12 16:56 | smlewis | New Issue | ||||||||
2013-03-12 17:00 | delucasl | Note Added: 0000163 | ||||||||
2013-03-12 17:01 | delucasl | Relationship added | related to 0000004 | |||||||
2013-03-13 11:05 | smlewis | Note Added: 0000164 | ||||||||
2013-03-13 11:07 | delucasl | Note Edited: 0000163 | bug_revision_view_page.php?bugnote_id=163#r57 |
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