MantisBT - Rosetta | |||||
| View Issue Details | |||||
| ID | Project | Category | View Status | Date Submitted | Last Update |
| 0000199 | Rosetta | [All Projects] Crash | public | 2013-03-06 18:59 | 2013-03-15 10:59 |
| Reporter | delucasl | ||||
| Assigned To | delucasl | ||||
| Priority | high | Severity | minor | Reproducibility | always |
| Status | resolved | Resolution | fixed | ||
| Platform | All platforms | OS | Any | OS Version | Any |
| Product Version | All | ||||
| Fixed in Version | |||||
| Application(s) Affected | all | ||||
| Command Line Used | anything that scores a protein | ||||
| Developer Options | Confirmed As Bug | ||||
| Fixed in SVN Version | 54296 | ||||
| Summary | 0000199: SymE is broken (or probably never worked to begin with ) | ||||
| Description | "Hi Sam, I for the life of me could not get a BugTracker account (the image to join isn't there, so I can't sign up!), so I decided to email you. I did a couple of things after we talked this morning. I ran both the monomer and assembled tetramer (in membrane mode, fixbb) with the symE flags (-score:symE_units 4; -score:symE_bonus 100). The tetramer didn't work (rosetta_scripts.default.linuxgccdebug: src/core/scoring/MembraneTopology.hh:133: bool core::scoring::MembraneTopology::allow_scoring(utility::pointer::ReferenceCount::Size) const: Assertion `seqpos <= allow_scoring_.size()' failed. Got some signal... It is:6) , but the monomer did run, it just did fixbb normally. The tetramer error appears to be a membrane issue...? I have all of this sorted in my directory: ~duranam/learning/SymE_bonus/tet for the tetramer ~duranam/learning/SymE_bonus/ for the monomer trial 97_aligned.pdb is my sequence and structurally symmetric (2-fold inverted) protein. I know I can run fixbb on the tetramer and get the same mutations for each chain, but I am looking for a way to maintain the symmetry within the protomer/monomer. " | ||||
| Steps To Reproduce | |||||
| Additional Information | |||||
| Tags | No tags attached. | ||||
| Relationships | |||||
| Attached Files | |||||
| Issue History | |||||
| Date Modified | Username | Field | Change | ||
| 2013-03-06 18:59 | delucasl | New Issue | |||
| 2013-03-06 18:59 | delucasl | Status | new => assigned | ||
| 2013-03-06 18:59 | delucasl | Assigned To | => delucasl | ||
| 2013-03-07 20:47 | delucasl | Note Added: 0000162 | |||
| 2013-03-15 10:59 | delucasl | Fixed in SVN Version | => 54296 | ||
| 2013-03-15 10:59 | delucasl | Note Added: 0000174 | |||
| 2013-03-15 10:59 | delucasl | Status | assigned => resolved | ||
| 2013-03-15 10:59 | delucasl | Resolution | open => fixed | ||
| Notes | |||||
|
|
|||||
|
|
||||
|
|
|||||
|
|
||||