MantisBT - Rosetta
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IDProjectCategoryView StatusDate SubmittedLast Update
0000017Rosetta[All Projects] Crashpublic2012-06-21 12:582012-06-21 17:37
Reportern.alexands 
Assigned Todelucasl 
PrioritynormalSeveritycrashReproducibilityalways
StatusresolvedResolutionfixed 
PlatformX86OSLinuxOS VersionCentOS
Product VersionTrunk 
Fixed in VersionTrunk 
Application(s) AffectedRosettaScripts
Command Line Usedrosetta_scripts.default.linuxgccdebug -in:file:s bound_ensemble_best_scoring.pdb -out:pdb -parser:protocol script.xml -database rosetta_database -membrane -overwrite -in:file:extra_res_fa ligand.params -membrane:normal_cycles 100 -membrane:normal_mag 15 -
Developer Options
Fixed in SVN Version49536
Summary0000017: Features reporters crashes with ResidueScoresFeatures when using membrane_highres
DescriptionWhen using the features reporters through rosetta scripts, if a membrane specific score function is used in conjunction with ResidueScoresFeatures, rosetta crashes.
Steps To Reproducerosetta_scripts.default.linuxgccdebug -in:file:s bound_ensemble_best_scoring.pdb -out:pdb -parser:protocol script.xml -database rosetta_database -membrane -overwrite -in:file:extra_res_fa ligand.params -membrane:normal_cycles 100 -membrane:normal_mag 15 -membrane:center_mag 2 -spanfile tms.span -in:file:fullatom
Additional Informationxml file is :


<ROSETTASCRIPTS>

        <SCOREFXNS>

                <s weights=membrane_highres/>

        </SCOREFXNS>

        <TASKOPERATIONS>

        </TASKOPERATIONS>

        <MOVERS>

                <SavePoseMover name=init_struct reference_name=init_struct/>

                <ReportToDB name=features_reporter db="features_IntegrationTest.db3" sample_source="Test the whole feature generation code stack.">

                        The following FeatureReporters are listed such that dependencies precede the FeatureReporters that depend on them.

                        <feature name=ResidueFeatures/>

                        <feature name=ResidueScoresFeatures scorefxn=s/>

    </ReportToDB>

        </MOVERS>

        <PROTOCOLS>

                <Add mover_name=init_struct/>

                <Add mover_name=features_reporter/>

        </PROTOCOLS>

</ROSETTASCRIPTS>
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Issue History
Date ModifiedUsernameFieldChange
2012-06-21 12:58n.alexandsNew Issue
2012-06-21 13:49delucaslAssigned To => delucasl
2012-06-21 13:49delucaslStatusnew => assigned
2012-06-21 17:37delucaslFixed in SVN Version => 49536
2012-06-21 17:37delucaslProduct Version => Trunk
2012-06-21 17:37delucaslFixed in Version => Trunk
2012-06-21 17:37delucaslStatusassigned => resolved
2012-06-21 17:37delucaslResolutionopen => fixed

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